Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi19g1380 | ATGCTTTCCAAGCTGCCCACCAGCCTTCCACCCCACCTGGCTCTCAAATTCATTAAAGTCTATTCCAATTCTGGCGATCTTCAACGTGCACGCCACTTGTTCGATAAAATTCCCCAACCAGACCTCCCTACATGGACCATTCTGATTTCAGCTCTCACTAAACATGGTCGCTCATTGGAAGCTATACAATATTATAATGATTTTAGGCACAAGAACTGCGTTGAACCCGATAAATTGTTACTGTTATCTGTGGCCAAGGCTTGTGCCAGCTTGAGGGATGTTATGAATGCCAAAAGGGTCCATGAGGATGCAATCCGATTCGGGTTTTGTTCGGATGTTTTGTTGGGTAATGCATTGATTGATATGTATGGGAAGTGCAGATGTTCTGAAGGTGCTAGGCTGGTTTTTGAAGGTATGCCTTTCAGGGATGTGATTAGCTGGACCTCGATGGCTTCTTGTTATGTGAATTGTGGACTTCTGAGAGAGGCTTTGGGAGCTTTTCGCAAAATGGGGTTGAATGGGGAAAGACCCAATTCGGTTACGGTGTCCTCAATTCTTCCTGCTTGTACGGATTTGAAAGATTTGAAATCAGGAAGAGAGGTTCATGGTTTTGTTGTGAGAAATGGAATGGGAGGAAATGTGTTTGTGAGTAGTGCTCTTGTAAACATGTATGCTAGTTGTTTAAGCATTAGGCAAGCTCAGTTGGTGTTTGATAGCATGTCTCGAAGAGACACTGTTTCATGGAATGTACTTATAACGGCATATTTCTTGAACAAAGAATGTGAGAAGGGTCTTAGTGTTTTTGGTAGGATGATGAGTGAAGGGGTTGGATTGAATTATGCTTCGTGGAATGCTGTAATTGGGGGATGCATGCAAAATGGACGAACTGAAAAAGCACTAGAGGTCCTCAGTCGAATGCAAAATTCAGGATTCAAACCTAACCAAATCACAATCACTAGTGTCTTGCCTGCTTGCACAAATTTAGAGAGCTTAAGGGGAGGCAAACAGATTCATGGATATATCTTTAGGCATTGGTTTTTTCAGGACTTAACAACTACCACTGCTTTGGTTTTCATGTATGCTAAATGTGGTGACTTGGAACTTTCTCGTAGGGTTTTCAGTATGATGACGAAAAGGGATACTGTTTCTTGGAACACGATGATCATTGCCACCTCGATGCATGGGAATGGAGAGGAAGCTTTGTTGCTCTTCCGAGAAATGGTGGATTCTGGGGTCAGGCCTAATTCTGTTACTTTTACTGGTGTTTTATCTGGCTGCAGTCATTCACGTCTTGTTGATGAAGGTCTCTTGATTTTTGATTCGATGAGCAGAGATCACTCAGTTGAACCTGATGCAGATCATCACTCGTGTATGGTAGATGTACTAAGCCGAGCTGGTCGCCTAGAAGAGGCATATGAGTTCATAAAAAAAATGCCTATTGAACCAACTGCTGGTGCTTGGGGAGCACTGCTCGGTGGCTGTAGAGTATATAAGAATGTAGAGTTGGGGCGAATTGCAGCAAACCGGTTGTTTGAGATTGAATCAGATAACCCTGGAAACTATGTACTTTTATCCAACATACTTGTTTCTGCCAAACTATGGAGTGAAGCATCAGAAACTAGAAAATTGATGAGAGACAGAGGAGTTACTAAAAATCCAGGTTGTAGTTGGATTCAGGTGAGAAACAGAGTCCATACTTTTGTTGTTGGTGATAAAAGTAATGATCAGAGTGATGAGATCTACAGATTTTTGGATTATATGGGGGAGAAGATGAGAATTGCAGGGTATTTGCCCAACACTGATTTTGTGCTGCAAGATGTTGATCAAGAAGAGAAAGAGGAGGTTTTATGCAACCATAGTGAGAAACTTGCTGTTGCTTTTGGTGTACTTAATCTGAATGGGGAGTCATCAATTCGGGTATTTAAGAATCTGAGAATATGTGGAGATTGCCATAATGCGATCAAGTTCATGGCCAAGATTGTTGGGGTGAAGATCATTGTGAGAGATTCCCTGAGGTTTCATCATTTCAGGGATGGATTATGCTCCTGTCAGGATTTTTGGTGA | 2064 | 0.4205 | MLSKLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW* | 688 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi19g1380 | 687 | NCBIfam | pentatricopeptide repeat | 282 | 314 | IPR002885 | - | |
| Vvi19g1380 | 687 | NCBIfam | pentatricopeptide repeat | 382 | 415 | IPR002885 | - | |
| Vvi19g1380 | 687 | NCBIfam | pentatricopeptide repeat | 417 | 452 | IPR002885 | - | |
| Vvi19g1380 | 687 | NCBIfam | pentatricopeptide repeat | 246 | 277 | IPR002885 | - | |
| Vvi19g1380 | 687 | NCBIfam | pentatricopeptide repeat | 145 | 178 | IPR002885 | - | |
| Vvi19g1380 | 687 | NCBIfam | pentatricopeptide repeat | 44 | 77 | IPR002885 | - | |
| Vvi19g1380 | 687 | Pfam | E motif | 497 | 559 | IPR046848 | - | |
| Vvi19g1380 | 687 | FunFam | Pentatricopeptide (PPR) repeat-containing protein | 444 | 606 | - | - | |
| Vvi19g1380 | 687 | Gene3D | Tetratricopeptide repeat domain | 431 | 558 | IPR011990 | GO:0005515 | |
| Vvi19g1380 | 687 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 279 | 624 | IPR046960 | GO:0003723|GO:0009451 | |
| Vvi19g1380 | 687 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 279 | 313 | IPR002885 | - | |
| Vvi19g1380 | 687 | Gene3D | Tetratricopeptide repeat domain | 53 | 199 | IPR011990 | GO:0005515 | |
| Vvi19g1380 | 687 | FunFam | Pentatricopeptide repeat-containing protein | 86 | 201 | - | - | |
| Vvi19g1380 | 687 | FunFam | Uncharacterized protein | 202 | 333 | - | - | |
| Vvi19g1380 | 687 | Pfam | PPR repeat family | 279 | 325 | IPR002885 | - | |
| Vvi19g1380 | 687 | Pfam | PPR repeat family | 380 | 427 | IPR002885 | - | |
| Vvi19g1380 | 687 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 244 | 278 | IPR002885 | - | |
| Vvi19g1380 | 687 | FunFam | Pentatricopeptide repeat-containing protein mitochondrial | 334 | 443 | - | - | |
| Vvi19g1380 | 687 | Gene3D | Tetratricopeptide repeat domain | 336 | 430 | IPR011990 | GO:0005515 | |
| Vvi19g1380 | 687 | Gene3D | Tetratricopeptide repeat domain | 200 | 335 | IPR011990 | GO:0005515 | |
| Vvi19g1380 | 687 | Pfam | PPR repeat | 44 | 73 | IPR002885 | - | |
| Vvi19g1380 | 687 | Pfam | PPR repeat | 246 | 276 | IPR002885 | - | |
| Vvi19g1380 | 687 | Pfam | PPR repeat | 456 | 478 | IPR002885 | - | |
| Vvi19g1380 | 687 | Pfam | PPR repeat | 145 | 174 | IPR002885 | - | |
| Vvi19g1380 | 687 | Pfam | PPR repeat | 352 | 379 | IPR002885 | - | |
| Vvi19g1380 | 687 | Pfam | PPR repeat | 117 | 140 | IPR002885 | - | |
| Vvi19g1380 | 687 | Pfam | DYW family of nucleic acid deaminases | 595 | 687 | IPR032867 | GO:0008270 | |
| Vvi19g1380 | 687 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 143 | 177 | IPR002885 | - | |
| Vvi19g1380 | 687 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 41 | 75 | IPR002885 | - | |
| Vvi19g1380 | 687 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 380 | 414 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi19g1380 | Vvi-Chr19 | 22939141 | 22941204 | Transposed |