Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1379 ATGGAACCTGGAAATGGGAAATTTTACCCTGAATCTCAGGGCTTTATGCTGGACCCAACAACTGCCATAAATACTGATACAAGACCTCCAGAGTTTAACAATTTGGAAGTTAAACCTGTGCGTAATTACTCCATACAGACAGGTGAGGAGTTTGCCCTGGAATTTATGCTTGATCGGGTGAATCCAAGGAATCAATTCATTCCAGATACTGCTGGTGATCCCCACTATGTACCAAAGTATACAGAATTGAAAGGGATTTTAGGCATCAATCATACAGGGTCTGAAAGTGGGTCAGATATCTCAATGCTTACAATTGTAGAAAGAGGCCCAAAAGAGTTTGAGAGAAAGAACTCTGCTTTATATGAAGACAGAAGTTACTATGGTTCTGTGCAATTGGTGCCACGGACTTCATCAGGGCATGATAGCAGTCGAGGAGTAATTCATGGGTATGCCTCTTCTGGAGCATCTGATAGCTCATCTACAAAGATGAAAGTTCTATGCAGCTTTGGTGGTAAAATCCTTCCCCGGCCTAGTGATGGAAAACTCAGATATGTTGGAGGTGAAACACGTATTATTCGTATAAGAAAGGACATTTCTTGGCAGGAGCTTGTGCAGAAAACGTTAATGGTCTTTAACCAAGCTCATATTATTAAGTATCAGCTTCCTGGGGAGGACCTTGATGCCTTAGTTTCTGTTTCTTGTGACGAGGATTTGCAGAACATGATGGAGGAATGTAATGAACTAGAAGATGGAGAAGGATCAAAGAAACTGAGGATGTTTCTGTTTTCTACAAGTGACTTGGATGATGCTTATTTTGGTCTGGACAGCACAGATGGTGATTCAGAGATTCAGTATGTTGTTGCTGTCAATGGCATGGACATGGGATCGAGAAAAAACTCAACTCTGCATGGTTTGGTAGGCTCTTCCTCAAATAATTTGGCTGATTTAGATGGGCAAAATATTGAGAGGAATGCCACTAGAGTTGCAACGGACTCTGTTGGCATCAGCACTCTGCCTTTGACAGGCACTATCGTCCCACCATCCACAATTCAATCTTCTCAACCAATTCTACCAAATTCTTCCAGTGCTTATGAAGCTGACCCACCGTTTTACCATGGCCAGATGATCTATCATGGAGAAACTAGTCAGCACATGCTGCATTATGGTTATCCTTCTCATCAATCTAATTGCACACCATATCAAGAAAGTACTAATCTGATGCCAGTTCATGGGCTGATGACTCAACAAGAAGGCTATGCTGAAGGGCAGCCATACATTGGCTTGCAAGTTCAGGATCCAAGTGTGCTAGTGAAGGAGGTAACTCTAAAAAATGATGCTTCAATTCAGCAAGAGAATATTCCTGAAAATATCTCTCCTTCAAAAAATGATTGTCTCATACCATCACAGCCATCTGATGGTGAGGTGATGGATCGCATTCCAGTTGAAGAAGCATTAGTCTCCATTTCTTCACTGGATCAATTTCCTTCAGAAAATAAGGGAAAGCACCACAAACCTGTGGAGATCTCTTCTTCTGTTGATGCTATGAATCAGGCACAGGTTCCTAAATCTGATTATGATCATCATCCCGCATCAAGTAGTCCATTTGCTCCTGTATATGCTGACCCTGGGTCTGGTCTAATGGATTTGAGCTACCTGGAGCCACCTGTGCTTCCTCAGAGGGTCTATTATTCTGAAAGAGTTCCCCGGGAGCAGGCAGAGCTGCTCAATCGGTTATCAAAGTCTGACGATTCACTTGGTTCTCAGTTTCTTATATCCCACTCACGTTCTGATATTGAAAAGCAGGATTCAGTCGCCGAATCCACTGACAAACTGCGGAATGGAAATCTGGCTCCTCAAACTGAACAGTCCATCTCAACTGGAGAAGCTATGGTTGAGGATATGGCTGTTAAGGCTGACCATGGAACAACCGGCACCAAAGATATCCCTAGGAAACTCCTGCTTCATGGAACAACTGAACCTGGATCAGAACTGCCTGCAATGAATCAAGTTGCTTCTGTTAAGCACTGTCAGGATCCTCTATCTACTCCACCGGAGCTTGATCAGGGTGAGATGTCCGGAAAGGATTTCACTAGTAATAACACTCTGGGAGTGGGGGATGCTCAAACTTTTGCTTGGACAGGGAGCTCTGTTGGTGTTTCCACGCCTGAGCAGGGAGATATCCTTATTGATATCAATGACCGGTTCCCTCGTGATTTCCTTTCCGATATATTCTCCAAAGCTGTACATTTTGCAGATTCCCCTGACATTAGCAAACCACAAAAAGATGGAGCTGGCTTGAGCTTAAACATGGAAAATCGTGAACCTAAGCATTGGTCATACTTTCAGAAGCTAGCACAGGGTGGATTTGTTCAAAATGATGTTTCTCTTATGGATCAAGATCATCTTGGATTTTCATCGGTCCTTACAAAGGTCGAAGAAGAAGTGTCTAAACCTTATCAATTTACGCCTTTAATGGCAGATGAAGTTTTGATAGGCCAGTTGGAGTCACGAATAAGTTTTGGTGAAGAAAATCAGAAAGAATCACCACCTGGTAGGATTGCTGCTGACAGTACTGATTTGCATTCAGATTACAGTCCTTCTGAAATAAAGGAGAGTGACAGTGTACAATTTGATCGTATGATCGAGAACCTTAGAACACCAGATTCAGAGGGCGAGGATGGGAAAATGGAAACCAAGAATATTGGTCGACCTCCTCTAGATCCTTCTATTGGAGATTTTGATATCAATACTTTGCAGATCATAAAGAATGAAGATCTTGAAGAGCTGAAGGAACTGGGTTCTGGTACTTTTGGGACCGTCTATCATGGAAAATGGAGGGGATCAGATGTTGCCATTAAGCGAATAAAGAAGATCTGCTTCACAAGTCGTTCATCGGAGCAAGAAAGATTGACCATAGAATTCTGGCGAGAAGCTGATATTCTCTCAAAGCTTCACCATCCAAATGTGGTGGCATTTTACGGTGTAGTGCACGATGGACCGGGAGCAACGTTAGCCACTGTCACTGAGTACATGGTTGATGGTTCTCTTAGGCATGTTCTACTTCGCAAAGATAGGTATCTTGATCGCCGCAAGCGGCTCTTAATTGCTATGGATGCTGCATTTGGAATGGAATATTTGCACTCAAAGAATATTGTGCATTTTGATTTGAAATGTGACAACTTGCTTGTGAACTTGAAAGATCCCCTACGACCCATTTGCAAGGTTGGTGACTTTGGCCTGTCAAAAATAAAGCGAAATACTTTGGTTTCTGGTGGCGTAAGGGGGACCTTACCATGGATGGCACCAGAGCTGCTTAATGGTAGCAGCAATAAAGTTTCTGAAAAGGTTGATGTGTTCTCCTTTGGTATCGTGTTATGGGAGATTCTCACTGGCGAGGAACCATATGCCAACATGCACTATGGTGCAATCATAGGAGGCATTGTGAGCAACACATTGAGGCCAACCGTTCCAAGCTCCTGTGATCCCGAATGGAGAACCCTAATGGAGCAGTGCTGGGCTCCTAACCCTGCAGTCCGGCCATCTTTCACGGAAATCACCGGTCGCTTAAGGGTGATGTCTGCAGCAGCCCAAACTAAAACACCAGGTCATAAGGCTTCTAAATAA 3624 0.4341 MEPGNGKFYPESQGFMLDPTTAINTDTRPPEFNNLEVKPVRNYSIQTGEEFALEFMLDRVNPRNQFIPDTAGDPHYVPKYTELKGILGINHTGSESGSDISMLTIVERGPKEFERKNSALYEDRSYYGSVQLVPRTSSGHDSSRGVIHGYASSGASDSSSTKMKVLCSFGGKILPRPSDGKLRYVGGETRIIRIRKDISWQELVQKTLMVFNQAHIIKYQLPGEDLDALVSVSCDEDLQNMMEECNELEDGEGSKKLRMFLFSTSDLDDAYFGLDSTDGDSEIQYVVAVNGMDMGSRKNSTLHGLVGSSSNNLADLDGQNIERNATRVATDSVGISTLPLTGTIVPPSTIQSSQPILPNSSSAYEADPPFYHGQMIYHGETSQHMLHYGYPSHQSNCTPYQESTNLMPVHGLMTQQEGYAEGQPYIGLQVQDPSVLVKEVTLKNDASIQQENIPENISPSKNDCLIPSQPSDGEVMDRIPVEEALVSISSLDQFPSENKGKHHKPVEISSSVDAMNQAQVPKSDYDHHPASSSPFAPVYADPGSGLMDLSYLEPPVLPQRVYYSERVPREQAELLNRLSKSDDSLGSQFLISHSRSDIEKQDSVAESTDKLRNGNLAPQTEQSISTGEAMVEDMAVKADHGTTGTKDIPRKLLLHGTTEPGSELPAMNQVASVKHCQDPLSTPPELDQGEMSGKDFTSNNTLGVGDAQTFAWTGSSVGVSTPEQGDILIDINDRFPRDFLSDIFSKAVHFADSPDISKPQKDGAGLSLNMENREPKHWSYFQKLAQGGFVQNDVSLMDQDHLGFSSVLTKVEEEVSKPYQFTPLMADEVLIGQLESRISFGEENQKESPPGRIAADSTDLHSDYSPSEIKESDSVQFDRMIENLRTPDSEGEDGKMETKNIGRPPLDPSIGDFDINTLQIIKNEDLEELKELGSGTFGTVYHGKWRGSDVAIKRIKKICFTSRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVHDGPGATLATVTEYMVDGSLRHVLLRKDRYLDRRKRLLIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVSNTLRPTVPSSCDPEWRTLMEQCWAPNPAVRPSFTEITGRLRVMSAAAQTKTPGHKASK* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1379 1207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1051 1063 IPR008271 GO:0004672|GO:0006468
Vvi19g1379 1207 MobiDBLite consensus disorder prediction 840 872 - -
Vvi19g1379 1207 SUPERFAMILY CAD & PB1 domains 178 267 - -
Vvi19g1379 1207 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1014 1205 - -
Vvi19g1379 1207 Gene3D Phosphorylase Kinase; domain 1 913 1012 - -
Vvi19g1379 1207 CDD PB1_UP2 166 262 - -
Vvi19g1379 1207 MobiDBLite consensus disorder prediction 608 624 - -
Vvi19g1379 1207 Pfam Protein tyrosine and serine/threonine kinase 927 1188 IPR001245 GO:0004672|GO:0006468
Vvi19g1379 1207 SMART PB1_new 177 264 IPR000270 GO:0005515
Vvi19g1379 1207 ProSitePatterns Protein kinases ATP-binding region signature. 932 957 IPR017441 GO:0005524
Vvi19g1379 1207 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 182 264 - -
Vvi19g1379 1207 SMART serkin_6 926 1192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1379 1207 Pfam PB1 domain 179 263 IPR000270 GO:0005515
Vvi19g1379 1207 CDD STKc_MAP3K-like 932 1189 - -
Vvi19g1379 1207 MobiDBLite consensus disorder prediction 885 908 - -
Vvi19g1379 1207 PANTHER SERINE-THREONINE PROTEIN KINASE 207 1190 - -
Vvi19g1379 1207 SUPERFAMILY Protein kinase-like (PK-like) 917 1187 IPR011009 -
Vvi19g1379 1207 PRINTS Tyrosine kinase catalytic domain signature 1116 1138 IPR001245 GO:0004672|GO:0006468
Vvi19g1379 1207 PRINTS Tyrosine kinase catalytic domain signature 1045 1063 IPR001245 GO:0004672|GO:0006468
Vvi19g1379 1207 PRINTS Tyrosine kinase catalytic domain signature 1160 1182 IPR001245 GO:0004672|GO:0006468
Vvi19g1379 1207 PRINTS Tyrosine kinase catalytic domain signature 1008 1021 IPR001245 GO:0004672|GO:0006468
Vvi19g1379 1207 MobiDBLite consensus disorder prediction 596 624 - -
Vvi19g1379 1207 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 919 1013 - -
Vvi19g1379 1207 ProSiteProfiles Protein kinase domain profile. 926 1191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1379 1207 Gene3D Transferase(Phosphotransferase) domain 1 1013 1206 - -
Vvi19g1379 1207 Gene3D - 181 264 - -
Vvi19g1379 1207 MobiDBLite consensus disorder prediction 885 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1379 Vvi-Chr19 22924959 22931674 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vvi19g1379 PK_Tyr_Ser-Thr 6.7e-62 CL0016