Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1375 ATGGACGAAGAAACCTTGGTTGATGAAAACTTCCCCCTATTTTCCAAAAGGAAACCCACCCCTAAACCCTCCAAAAACTCCACCACCACCGCTCAAAACCCTAATCCAGAGCAACCGCTCACAAGAACCACCAACCCCACTTCACCATCTTCCACGTTCGCCGACCTCGGCCTCGCTGAATGGGCAGTGCAGGCCTGCAAAGAGCTCGGAATGCGACGGCCGACGCCGGTCCAGCACCACTGCATACCCCGAATCCTCGCCGGTGACGACGTGCTAGGGCTCGCCCAGACTGGGAGCGGCAAAACGGCGGCGTTTGCTCTGCCGATACTCCACCGCCTAGCGGAGGACCCTTTTGGGGTTTTCGCGCTGGTGGTGACGCCCACGCGGGAGCTGGCGTATCAGTTGGCCGAGCAGTTTCGGGCTCTCGGGTCGTGCTTGCATCTGCGGTGTGCGGTGGTGGTGGGTGGGATGGATATGATCAATCAGGCGCAGACTCTGATGCAACGGCCGCATGTGGTTATTGCCACTCCGGGGAGGGTTAAGGTTCTTCTTGAGCAGAATCCTGATATTCCTGCTGTTTTCGCCAGAACTAAGTTTCTGGTTTTGGATGAAGCTGATAGAGTTTTGGACGTGGGCTTTGAAGAGGAACTGAGAGTGGTGTTTCAGTGCTTGCCAAAAAATCGGCAGACTTTATTATTTTCTGCGACAATGACAAGTGACCTACAGACACTGCTTGAGCTTTCGTCAAATAAGGCATACTTCTATGAGGCATATGAAGGCTTCAAGACAGTTGAATCTCTTAAACAGCAGTATATTTTTGTCCCCAAAAATGTGAAGGATGTTTATCTTTTGCACATTTTATCCAAAATGGAAGAGATGGGTATTCGCTCTGCAATTATATTTGTTTCCACCTGCAGGAGTTGTCACCTTCTAAGTTTATTACTGGAAGAGCTTGATCTGGAAGTCGCAGCGCTGCATTCATTCAAATCCCAGTCTTTGAGGCTTGCTGCAGTACATCGATTCAAATCTGGACAGGTTCCAATATTGCTTGCAACTGATGTTGCAAGTCGTGGTTTGGACATTCCTACGGTTGATCTTGTTGTCAATTATGATATTCCAAGGTACCCAAGAGACTATGTTCATCGTGTGGGAAGAACCGCGAGAGCAGGTAGAGGAGGCCTGTCTTTGAGCATTGTTACCCAGAATGATGTAGACCTCATTCATGAAATAGAAGCTGTTCTTGGAAAGCAATTGGACAAGTTTGACTGTAAAGAGAAAGAAGTACTTGATAATATCACTAAGGTCTACAAAGCCAGACGTGTTGCAACAATGAAGATGATGGATGATGGCTTTGAGGAGAAAGCAAAAGCACGAAAAGCACAAAAACTCAAGACATTGGCAGAGAAAGGATTATTAAAGAAAAAGACCAGAAAGAGAAAAAGAGAAAAGGCAAGCAAAATAGGAGATTAA 1470 0.4755 MDEETLVDENFPLFSKRKPTPKPSKNSTTTAQNPNPEQPLTRTTNPTSPSSTFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILHRLAEDPFGVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQRPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLHILSKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVPILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVDLIHEIEAVLGKQLDKFDCKEKEVLDNITKVYKARRVATMKMMDDGFEEKAKARKAQKLKTLAEKGLLKKKTRKRKREKASKIGD* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1375 489 CDD SF2_C_DEAD 267 399 - -
Vvi19g1375 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 409 IPR027417 -
Vvi19g1375 489 Gene3D - 16 256 IPR027417 -
Vvi19g1375 489 SMART ultradead3 70 270 IPR014001 -
Vvi19g1375 489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 255 IPR014001 -
Vvi19g1375 489 MobiDBLite consensus disorder prediction 468 489 - -
Vvi19g1375 489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 429 IPR001650 -
Vvi19g1375 489 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 40 483 - -
Vvi19g1375 489 MobiDBLite consensus disorder prediction 1 51 - -
Vvi19g1375 489 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 201 209 IPR000629 -
Vvi19g1375 489 Pfam Helicase conserved C-terminal domain 282 390 IPR001650 -
Vvi19g1375 489 Pfam DEAD/DEAH box helicase 75 243 IPR011545 GO:0003676|GO:0005524
Vvi19g1375 489 Gene3D - 262 488 IPR027417 -
Vvi19g1375 489 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 51 79 IPR014014 GO:0003724
Vvi19g1375 489 SMART helicmild6 309 390 IPR001650 -
Vvi19g1375 489 CDD DEADc_DDX49 53 256 - -
Vvi19g1375 489 MobiDBLite consensus disorder prediction 20 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1375 Vvi-Chr19 22897111 22904725 Transposed