Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1373 ATGGACCTCTCAATCCCTCACACGACACTATACCCATTTCACCTTTGTTCTTCGAAGCCACTGTTATTTAATCAAAACTCCTCAAATCTCGTTCTCTTCAAGCCACTCTCTTTACCTTCTTCTAATCGCAGAAGATCACGTCAGTACCACAAAAGACCAGTTTTTGTTGCTGCTTCGTCTGCAAACCCAAGTGGGCCAAATGGGTTTTCTTGGCTCGGTCTGGCTTATTCGATTCAGCGTGGGTCGGAGCGGTTCTGGGTGCAATTTGGGGGTCTGGTGAAGAGGGAAACTGGGTTTGACTTGGAAGATGCTAATTCGAAGGTGAACGAGTTTGTGGGCCCAGTTCGTGGTGCGATGAAGAGAGGTGAGGATGGGTTGGATCGGTTTAGGACTGAGTTGCTTCCAGAGTTTGTGAATTGGAATCGGTGGGAGCGTTGGAAGGATCTCAAGAATTGGGAAGCTAAACGAATTGGCGCCCTGATTCTCTATACATTTGTTGTGATAATATCTTTTCGAGGTATATATTTGGCATTTCAAGCCCCTCGTCTAGATCGTCAAAGAAAAGAGGTCACAGAGGCTTATATGGAGGCACTGATTCCTGAGCCATCTCCAAGTAATATTAGAAAGTTTAAAAAGGGCATGTGGAGGAAGACAATACCTAAAGGTCTGAAAATGAAGAAATTCATTGAAAGACCTGATGGAACCTTAATTCATGATAGTTCTTATGTTGGGGAAGATGCATGGAGTGATGATCCAGAGCCTCAGGACAATGTGAATCAAATTATTGACAGTAATGTAAAATTAAATGCAGAAGTAAAGAAAGAACTGAAGGAGGACTTGGGCATTTCAGGTAAAGATCAACAAAATAGTGGAACATGGCGTGAAAGGCTTAATACATGGAAGGAAATTCTCAAGAAGGATAAGTTAAAGGAGGATTTAGAATCCTTAAATGCCAAATATGCAGTTGAATTTGACATGAAAGAAGTGGAAAACAGCCTTCGCAAGGATGTGGTAGAAAAGGTACCAGAGTCAAATGGGACTAGAGCACTGTGGATTTCCAAGAGATGGTGGCGCTATCGTCCTAAACTTCCCTATACTTACTTTCTTCAGAAACTTGATAGCTCTGAGGTTGCTGCAATTGTCTTCACTGAGGATCTGAAAAAATTGTATGTAACAATGAGAGAAGGATTTCCCTTAGAATACATTGTTGATATTCCCCTTGACCCACACTTGTTTGAGATGATCTCAAGCTCTGGAGTTGAAGTAGATCTCCTTCAGAGGCGACAAATCCATTACATTTTTAAAGTTGTGATTGCATTGGTACCTGGAATATTGATCTTGTGGTGTATAAGAGAGTCTGTGATGCTTCTTCATGTTACTTCAAAGCGCTTTCTATATAAAAAGTATAATCAACTTTTTGATATGGCTTATGCAGAAAACTTTATCCTGCCAGTTGGAGATGGTGAAACAAAATCAATGTACAAAGAAGTAGTATTAGGGGGTGATGTTTGGGACCTTCTGGACGAGTTAATGATTTATATGGGAAACCCCATGCAGTACTATGAAAGAGGTGTACCATTTGTCCGGGGTGTTCTTCTCTCTGGTCCTCCGGGCACAGGAAAAACTCTTTTTGCACGGACGCTTGCAAAGGAAAGTGGGATGCCCTTTGTCTTTGCATCTGGTGCAGAGTTCACAGATAGTGAAAAAAGTGGTGCAGCAAGGATTAATGAAATGTTTTCAATTGCAAGGAGAAACGCTCCTTGTTTTGTATTTGTGGATGAAATTGATGCTATTGCTGGAAGGCATGCAAGGAAAGATCCACGAAGAAAGGCAACATTTGAGGCTTTGATAGCACAGCTTGAGGGAGAGAAGGAAAAAACTGGTGTTGATCGGTTTTCACTTAGACAAGCTGTGATATTCATCTGTGCTACCAATCGACCAGATGAATTGGACCTAGAATTTGTTCGTTCTGGACGCATTGACCGTCGGCTGTACATTGGTTTACCTGATGCAAAGCAGCGGGTACAAATTTTTGGTGTGCACAGTGCAGGAAAACAGCTTGCTGAAGATGTGGACTTTGGAAAACTTGTTTTCCGCACTGTTGGTTATTCTGGGGCAGATATTCGAAATCTTGTCAATGAAGGAGCAATAATGTCTGTGAGAAAAGGTCATTCCAAGATATACCAGCAGGATATTGTTGATGTGTTAGATAAACAATTGCTTGAGGGAATGGGCGTGCTCCTTACGGAGGAAGAGCAACAGAAATGCGAAGAAAGTGTGAGTTTTGAAAAGAAAAGACTGCTGGCTGTACATGAAGCTGGTCACATAGTGTTAGCTCACTTGTTTCCTCGATTTGACTGGCATGCATTTTCTCAGCTCCTGCCTGGTGGCAAGGAAACTGCAATATCTGTTTTTTACCCCAGAGAAGATATGTTAGACCAGGGTTACACGACCTTTGGCTATATGAAAATGCAAATGGTGGTTGCTCATGGTGGCCGATGTGCTGAACGTGTTGTGTTTGGCGATGAGATAACTGATGGAGGAAGGGATGACCTAGAAAAGATTACGAAGATTGCTAGAGAGATGGTAATCAGCCCAGCAAATTCAAGGTTGGGGCTTACTGCTTTGACAAAACGAGTGGGGTTAATGGATAGACCTGATAGTCCAGATGGCGAGTTAATAAAGTACAGGTGGGATGACCCTTTTGTGATTCCTGCCAACATGACACTTGAAGTATCTGAGCTGTTCAGTCGAGAATTAACAAGGTACATTGAAGAGACAGAAGAAATTGCAATGAGTGGTTTGAAGGTGAACAGGCACATATTGGATATGATTACAAACGAACTGTTGGAAAATTCAAGGATAACTGGATTGGAAGTTGATGAGAAAATGAAGGGACTCTCTCCAATAATGTTCGAGGATTTTGTGAAACCATTCCAAATAAACTTAGAAGAGGAGGGACCCTTGCCTCACAATGATCGGGTGAGATACCAGCCACTGGACATATATCCTGCTCCACTCCACAGATGTTAA 3033 0.4217 MDLSIPHTTLYPFHLCSSKPLLFNQNSSNLVLFKPLSLPSSNRRRSRQYHKRPVFVAASSANPSGPNGFSWLGLAYSIQRGSERFWVQFGGLVKRETGFDLEDANSKVNEFVGPVRGAMKRGEDGLDRFRTELLPEFVNWNRWERWKDLKNWEAKRIGALILYTFVVIISFRGIYLAFQAPRLDRQRKEVTEAYMEALIPEPSPSNIRKFKKGMWRKTIPKGLKMKKFIERPDGTLIHDSSYVGEDAWSDDPEPQDNVNQIIDSNVKLNAEVKKELKEDLGISGKDQQNSGTWRERLNTWKEILKKDKLKEDLESLNAKYAVEFDMKEVENSLRKDVVEKVPESNGTRALWISKRWWRYRPKLPYTYFLQKLDSSEVAAIVFTEDLKKLYVTMREGFPLEYIVDIPLDPHLFEMISSSGVEVDLLQRRQIHYIFKVVIALVPGILILWCIRESVMLLHVTSKRFLYKKYNQLFDMAYAENFILPVGDGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVPFVRGVLLSGPPGTGKTLFARTLAKESGMPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRKATFEALIAQLEGEKEKTGVDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKQLAEDVDFGKLVFRTVGYSGADIRNLVNEGAIMSVRKGHSKIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEESVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMLDQGYTTFGYMKMQMVVAHGGRCAERVVFGDEITDGGRDDLEKITKIAREMVISPANSRLGLTALTKRVGLMDRPDSPDGELIKYRWDDPFVIPANMTLEVSELFSRELTRYIEETEEIAMSGLKVNRHILDMITNELLENSRITGLEVDEKMKGLSPIMFEDFVKPFQINLEEEGPLPHNDRVRYQPLDIYPAPLHRC* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1373 1010 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 738 IPR027417 -
Vvi19g1373 1010 Pfam Peptidase family M41 760 961 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi19g1373 1010 Gene3D - 670 741 - -
Vvi19g1373 1010 SMART AAA_5 527 670 IPR003593 GO:0016887
Vvi19g1373 1010 Pfam AAA+ lid domain 690 732 IPR041569 -
Vvi19g1373 1010 SUPERFAMILY FtsH protease domain-like 762 974 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi19g1373 1010 FunFam ATP-dependent zinc metalloprotease FTSH 12, chloroplastic 485 669 - -
Vvi19g1373 1010 FunFam ATP-dependent zinc metalloprotease FTSH 12, chloroplastic 753 968 - -
Vvi19g1373 1010 FunFam ATP-dependent zinc metalloprotease FTSH 12, chloroplastic 670 741 - -
Vvi19g1373 1010 Gene3D Peptidase M41 753 968 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi19g1373 1010 Pfam ATPase family associated with various cellular activities (AAA) 531 667 IPR003959 GO:0005524|GO:0016887
Vvi19g1373 1010 Gene3D - 485 669 IPR027417 -
Vvi19g1373 1010 PANTHER ATP-DEPENDENT PROTEASE 156 982 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1373 Vvi-Chr19 22854358 22885628 Transposed