Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1363 ATGGCATCCGCAGCTGCTTCACCCTCTTCACTATCTCTCCTCCACTCCACCTCTGCCGCTCGCTCCTCCCCGCGCCTCCCTTCGGCTTCCCTCCGCCTCCCCACCCTCCCTCTCCGCCGTCTGGGCTTCGCCGGCGCCGCTGCTGACTCGCTTCTGACCCTCCATGTGGCGTCCAGAACCAGGTCTTTTAGAGGGAAGGCTTCCAGGGGGGTGGTGTCAATGGCCAAGAAGAGCGTGGGTGACCTCACGGGGGCGGATTTGAAGGGGAAGAAGGTGTTTGTGAGGGTGGATTTGAATGTGCCTCTTGATGACAACCAGAAGATTACTGACGATACCAGGGTTCGAGCTGCCATTCCCACTATCAAGTATTTGATCGACAATGGTGCTAAAGTCATTCTTTCTAGCCATTTGGGAAGACCAAAGGGAGTAACTCCAAAATTCAGCTTGGCGCCTCTTGTGCCAAGGTTATCTGAGCTTCTTGGCATTCAGATTGTGAAGGCTGATGACTGTATTGGCCCAGAGGTAGAAAAGTTAGTGACTGCACTTCCTGATGGTGGTGTACTCCTTCTCGAGAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGAACCCGAATTTGCAAAGAAGCTTGCCTCCATAGCTGATCTCTATGTGAATGATGCATTTGGTACTGCACATAGAGCCCATGCCTCAACTGAGGGGGTCACTAAGTTCTTGAAGCCATCTGTTGCTGGTTTCCTTTTACAGAAGGAACTGGACTATCTCGTTGGGGCAGTTTCAAGCCCAAAGAGGCCATTTGCTGCCATTGTGGGTGGTTCAAAGGTCTCATCCAAGATCGGAGTCATTGAATCTCTCCTCGAAAAGTGTGATATCCTACTTCTAGGTGGAGGAATGATCTTCACATTTTACAAGGCACAGGGTCTCTCAGTGGGTTCATCCCTGGTAGAGGAAGATAAGCTAAGCCTTGCTACATCACTTCTCGAGAAGGCCAAGGCAAAAGGAGTATCTCTCCTGCTACCCACCGATGTTGTGATTGCTGACAAGTTTGCCCCTGATGCAAACAGCAAGATTGTGCCAGCATCAGCCATTCCTGATGGATGGATGGGATTGGATATTGGACCTGATTCTATTAAGATATTCAATGAAGCTTTGGAGACCACCAAAACAGTTATCTGGAACGGACCGATGGGAGTGTTTGAGTTTGATAAGTTTGCAGAAGGAACAGTGGCCGTTGCAAAGAAGCTAGCGGAGCTGAGTGGGAAGGATGTGACAACAATCATTGGAGGTGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTCGCTGATGTGATGAGCCACATATCAACGGGTGGAGGTGCCAGTTTGGAGTTGTTGGAAGGGAAAGAACTCCCTGGTGTTGTTGCCCTTGATGAAGCTACTCCAGTTCCAGTGTAA 1437 0.4997 MASAAASPSSLSLLHSTSAARSSPRLPSASLRLPTLPLRRLGFAGAAADSLLTLHVASRTRSFRGKASRGVVSMAKKSVGDLTGADLKGKKVFVRVDLNVPLDDNQKITDDTRVRAAIPTIKYLIDNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQIVKADDCIGPEVEKLVTALPDGGVLLLENVRFYKEEEKNEPEFAKKLASIADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLSLATSLLEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSIKIFNEALETTKTVIWNGPMGVFEFDKFAEGTVAVAKKLAELSGKDVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDEATPVPV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1363 478 SUPERFAMILY Phosphoglycerate kinase 81 472 IPR036043 GO:0004618|GO:0006096
Vvi19g1363 478 Pfam Phosphoglycerate kinase 85 462 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 CDD Phosphoglycerate_kinase 82 472 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 PANTHER PHOSPHOGLYCERATE KINASE 76 473 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 FunFam Phosphoglycerate kinase 15 145 - -
Vvi19g1363 478 FunFam Phosphoglycerate kinase 246 462 - -
Vvi19g1363 478 Hamap Phosphoglycerate kinase [pgk]. 81 472 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 Gene3D - 80 256 IPR015824 GO:0004618|GO:0006096
Vvi19g1363 478 PRINTS Phosphoglycerate kinase family signature 185 200 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 PRINTS Phosphoglycerate kinase family signature 425 436 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 PRINTS Phosphoglycerate kinase family signature 448 465 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 PRINTS Phosphoglycerate kinase family signature 244 266 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 PRINTS Phosphoglycerate kinase family signature 213 235 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 PRINTS Phosphoglycerate kinase family signature 389 414 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 PRINTS Phosphoglycerate kinase family signature 267 286 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 PRINTS Phosphoglycerate kinase family signature 108 130 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 PRINTS Phosphoglycerate kinase family signature 86 102 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 PIRSF Pgk 72 477 IPR001576 GO:0004618|GO:0006096
Vvi19g1363 478 Gene3D - 259 472 IPR015824 GO:0004618|GO:0006096
Vvi19g1363 478 ProSitePatterns Phosphoglycerate kinase signature. 91 101 IPR015911 GO:0004618|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1363 Vvi-Chr19 22741269 22745724 Tandem