Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1362 ATGGCAACAAAGAGGAGTGTGGGTGATCTGAAGGAGGCGGATTTGAAGGGGAAGAGGGTGTTTGTGAGGGTTGATCTGAATGTTCCTTTGGATGAGAGTCTCAAGATCACCGATGACACCAGAGTCCGTGCCGCTGTGCCCACCATCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCTAAAATACCAGAAGGTGGGGTTCTCCTCCTTGAGAATGTGAGGTTTTACAAGGAGGAAGAGAAGAATGACCCTGAATTTGCCAAGAAGCTAGCTTCACTTGCAGATCTCTATGTGAATGATGCATTTGGAACCGCTCACAGAGCCCATGCATCTACAGAGGGAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAATCCTTGTTGGGGAAGGTTGATGTCCTGCTTTTGGGTGGAGGAATGATCTTTACCTTTTACAAGGCCCAAGGTTACGGTGTTGGTTCCTCCCTTGTAGAGGAAGACAAGCTGGATCTTGCAACTTCACTTCTTGAAAAGGCCAAGTCCAAAGGTGTCTCACTACTTCTCCCCGCAGATGTTGTGATTGCTGACAAGTTTGCTGCTGATGCTAACAGCAAGGTTGTCCCTGCATCCTGTATTCCAGATGGTTGGATGGGGCTGGATATCGGACCTGACTCTATCAAGACTTTTGGCGAATCTTTAGATACTACCAAAACCATCATTTGGAATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAATCGGAGGTGGTGATTCTGTTGCTGCTGTAGAGAAGGTTGGGCTCGCTGAAAAGATGAGCCACATCTCAACCGGCGGTGGTGCCAGCTTGGAGTTGCTGGAGGGGAAGACATTGCCTGGAGTCCTTGCACTTGACGACGCCTGA 1206 0.4834 MATKRSVGDLKEADLKGKRVFVRVDLNVPLDESLKITDDTRVRAAVPTIKYLMGHGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVKILVAKIPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLGKVDVLLLGGGMIFTFYKAQGYGVGSSLVEEDKLDLATSLLEKAKSKGVSLLLPADVVIADKFAADANSKVVPASCIPDGWMGLDIGPDSIKTFGESLDTTKTIIWNGPMGVFEFDKFALGTEAIAKKLADLSEKGVTTIIGGGDSVAAVEKVGLAEKMSHISTGGGASLELLEGKTLPGVLALDDA* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1362 401 Hamap Phosphoglycerate kinase [pgk]. 9 400 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 FunFam Phosphoglycerate kinase 178 390 - -
Vvi19g1362 401 Gene3D - 8 184 IPR015824 GO:0004618|GO:0006096
Vvi19g1362 401 CDD Phosphoglycerate_kinase 10 400 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 Pfam Phosphoglycerate kinase 11 390 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618|GO:0006096
Vvi19g1362 401 SUPERFAMILY Phosphoglycerate kinase 9 400 IPR036043 GO:0004618|GO:0006096
Vvi19g1362 401 PRINTS Phosphoglycerate kinase family signature 113 128 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 PRINTS Phosphoglycerate kinase family signature 141 163 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 PRINTS Phosphoglycerate kinase family signature 172 194 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 PRINTS Phosphoglycerate kinase family signature 195 214 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 PRINTS Phosphoglycerate kinase family signature 317 342 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 PRINTS Phosphoglycerate kinase family signature 353 364 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 PRINTS Phosphoglycerate kinase family signature 376 393 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 PIRSF Pgk 2 401 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 FunFam Phosphoglycerate kinase 11 177 - -
Vvi19g1362 401 PANTHER PHOSPHOGLYCERATE KINASE 4 401 IPR001576 GO:0004618|GO:0006096
Vvi19g1362 401 Gene3D - 187 400 IPR015824 GO:0004618|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1362 Vvi-Chr19 22723116 22727588 Tandem