Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1355 ATGGCTGAGGAAGCAATACCCAAGGAGATACAGGTAGCCAAAGATGAGGTCCCTCAAAAGCAAGAGCCATCAAAGAAGGACGTTGAGGTTGAAGGGGCTGCAACTGGGGATGTAAAAGATGCAGAGAAAGATGGAGATTCCAAGAAATTCAATGACCCGAAGCCGGGATTGGCAGCATTGATTGATGATGAGAAGGAAAATGAAGGTGTGTCTAAGGATTCAGTAGTTGATTCCTTGGTTGCTGAGAGGGGAGCTTCATTCCAGGAGGAGAGCAACCTTCCATCCGATCTCAAAGACTTGGAGAAGAAGGCATTGCTTGATCTCAGATCGAAGATCGAAGACGCAATACGCAGTAACACTTTGTTCGAGGAGGAGAAGAAGCAAGCGGAAGAGGCCGAGAAAGCAAGGTCGCCGGAGAAAGAAGGAGAAGAGAAGGAAAAATCAGTGGTGAATGAAGGACAAGGAGAAGAAAAAAAACCAGAGGAATTGGCAGTAGAGGAAGGGAAAGAAGAAGAAAAACCCGAAAACTTGGGCTTCAATGGAGAGAAAAATGAGACCAAACAGAAAGAAGAGGAACAAGAGAAAATCAATATTGAAATCGGGAAAAAGGCCATTGAAGTTGACGAGGAAATCAAGCTGTGGGGAGTACCCTTACTGCCAAGCAAAGGAGACAAGGGAACCGATGTAATCCTCCTCAAATTCTTGCGAGCCCGAGAATTCAAGGTCCAGGAGGCCTTCGAGATGCTGAGAAACACCCTCAAATGGATAAAAGATAACAACATCGACATCATTCTGGAGGAGGAGTTTCCGCCCGAGCTGAGCTCGGTGGCATACATGCAAGGCATGGATAGGAAAGGCCACCCCATCTGCTACAACATCTTCGGCACGTTTCTGAACGATGAAATCTACAACAAGACGTTTGGGACCGAAGAACTTCGCCACAAGTTCTTGAGATGGAGGTTTCAGCTGATGGAGAGGGGGATTAAGAAGCTTGATTTTGGGTCAGGTGGGGCAACGTCAATGCTTCAAGTGAATGACCTGAGGAACAGCCCTGGGCCGACCAAGAAGGAGCTTCGCCAAGCTATGAAACAGGCCGTTGGGCTTCTCCAAGACAATTACCCTGAATTTGTTTCAAGAAATATCTTCATTAATGTGCCCTTCTGGTCTTACGCCTTCTATGCTGTTGTATCGCCTTTCTTCACACAAAGAAGCAAGAACAAATTCGACTTTGCCCGCCCTGCCAGGGTCACTGAAACCCTTCTCAAGTACATTGATGCTCAGCAAATCCCGGTTGGTTATGGTGGGTTTCACAGGGAGAATGATCCAGACTTCTCCATTGAAGATGGTGTTTCAGAGGTTATTATAAAGGGTGGATCATCAGGAGCCATTGCAATACCTGCACCAGAGGTAGGGACAAAATTCACATGGGAGATAACAGTGTTGGGGTGGGACGTGAACTACAGGGAGGAATTCGTGCCGAAAGATGAAGGGTCGTATACGATGATAGTACAGAAGGAGAGGAAGGTGGGGTGGGAGGAGGGAGCTATCAGAAACTCCTTCACCAACAAGGAAGCAGGCATGCTTGTGCTTACCATTGACAACGCTACTTTCAAGAAGAAGAGGGTTTTGTATCGATACAAGCCCAACTCCACCTCCACCACCACCACCACCCCCTCTTCTTCTACTACTACATGA 1695 0.4726 MAEEAIPKEIQVAKDEVPQKQEPSKKDVEVEGAATGDVKDAEKDGDSKKFNDPKPGLAALIDDEKENEGVSKDSVVDSLVAERGASFQEESNLPSDLKDLEKKALLDLRSKIEDAIRSNTLFEEEKKQAEEAEKARSPEKEGEEKEKSVVNEGQGEEKKPEELAVEEGKEEEKPENLGFNGEKNETKQKEEEQEKINIEIGKKAIEVDEEIKLWGVPLLPSKGDKGTDVILLKFLRAREFKVQEAFEMLRNTLKWIKDNNIDIILEEEFPPELSSVAYMQGMDRKGHPICYNIFGTFLNDEIYNKTFGTEELRHKFLRWRFQLMERGIKKLDFGSGGATSMLQVNDLRNSPGPTKKELRQAMKQAVGLLQDNYPEFVSRNIFINVPFWSYAFYAVVSPFFTQRSKNKFDFARPARVTETLLKYIDAQQIPVGYGGFHRENDPDFSIEDGVSEVIIKGGSSGAIAIPAPEVGTKFTWEITVLGWDVNYREEFVPKDEGSYTMIVQKERKVGWEEGAIRNSFTNKEAGMLVLTIDNATFKKKRVLYRYKPNSTSTTTTTPSSSTTT* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1355 564 Pfam CRAL/TRIO, N-terminal domain 193 251 IPR011074 -
Vvi19g1355 564 CDD SEC14 266 435 IPR001251 -
Vvi19g1355 564 PRINTS Cellular retinaldehyde-binding protein signature 360 381 - -
Vvi19g1355 564 PRINTS Cellular retinaldehyde-binding protein signature 393 412 - -
Vvi19g1355 564 PRINTS Cellular retinaldehyde-binding protein signature 230 252 - -
Vvi19g1355 564 SUPERFAMILY CRAL/TRIO domain 276 438 IPR036865 -
Vvi19g1355 564 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 266 441 IPR001251 -
Vvi19g1355 564 Pfam CRAL/TRIO domain 276 435 IPR001251 -
Vvi19g1355 564 MobiDBLite consensus disorder prediction 114 194 - -
Vvi19g1355 564 SMART CRAL_TRIO_N_2 227 252 IPR011074 -
Vvi19g1355 564 Coils Coil 112 132 - -
Vvi19g1355 564 SUPERFAMILY CRAL/TRIO N-terminal domain 226 268 IPR036273 -
Vvi19g1355 564 MobiDBLite consensus disorder prediction 58 72 - -
Vvi19g1355 564 MobiDBLite consensus disorder prediction 1 51 - -
Vvi19g1355 564 PANTHER PATELLIN-1 48 549 IPR044834 GO:0008289
Vvi19g1355 564 Gene3D GOLD domain 452 547 - -
Vvi19g1355 564 MobiDBLite consensus disorder prediction 1 75 - -
Vvi19g1355 564 SMART sec14_4 271 438 IPR001251 -
Vvi19g1355 564 Gene3D - 183 451 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1355 Vvi-Chr19 22654525 22657736 Dispersed