Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1352 ATGAAAACCAAACCCCATGTTTGGATCAAGCTGAGATTTCTATTCTCAGTTTCAAGTAGTTTTTTCAATCTAATTCCCAAAACCCCAGTTGCAAAAACTAGGGTTTGGGCACCAGTTGCTGCAATTAGCACCATTACTGCATCGGTAAACGAAAGCCCAGTTGCAAAAAATAGGGTATGGACACAAATTAGTAGAACTGCCGCCACTACAGCATTGATAAACGGAACCCCAGATGGAAATTTGGTAGAAGTGAGGGATGATCACCCCATAAACTCTACTGATGTTTTTAGGAAATGGGGTTGTTCGGATAGTGAAATAGCTAAGATATTTGTGCGTAGGCCATCTCTGCGCAGAGCAGACCCCAACCTAATTCAATCCAAACTCAATGTACTCAGTTTGTTGGGACTGACCTCAGCTGACCTTGTAAAGATTATCAATTGTCGCCCCCGGTTTTTGAGTTGTAGAATCAACCGGTGCTTTGATGAGCGCATTGAATTCTTCTTAGAGTTGTTTGGATCGAGGGACTTCCTTCGTAAAGCCATTGTTAGGAATCCATCGCTGTTGATTTATGACCTTAATAGTAAGATTAAACGTGTGGTTGAGCTCTATGAAGGAATGGGTGTTGCTCGAAAGGACTTCATTTTGATGGTATCGTCTAGGCCTACTATGATTTCACGAACTTCGTTTAATGATGAGAAGTTGGAGTATATTAGGAGGACTGGAGTTTCCAAGAAATCAAAGATGTACAAGTATGTGGTTGTTCTCATGGGAATCTCACGCCTTGAAACAATCCGAGAGAAGGTGGGAAACTTGGAGAAGTTTGGCTTTTCAGAGGATGAGGTGTTGGGGCTATTTGGGCGGTCTCCACTTGTGTTGACACTCTCTGTTGATAAGGTTCAGAGGAACATGACTTATGTTTTGGGCACAATGAAGTTGCCTGCCAGAGCAGTCCTTGATTGCCCCTTTCTGCTGTACGCTAATTTGGAGGTTGTGTTGAAGCCACGTTTTCTTCTTGCAGGGAAGATTGAAGAAATGGGCCTGGCTCCTCAAATCAAAGGACCTAAATTGTTCAGGGCATTGAGGATGAAAGAGGATAGGTTCTTGGGGGCATTTGTTACATGTCACCCAGAGTCTCTCTCTAATGCATTAATGGAATACTACAGAAACATGAAAGGTCTCAAGCGATTAGCTGTAGCTTCAAAGAAGAACTTGCGTCAAGGATTCCCTTTCTGA 1233 0.429 MKTKPHVWIKLRFLFSVSSSFFNLIPKTPVAKTRVWAPVAAISTITASVNESPVAKNRVWTQISRTAATTALINGTPDGNLVEVRDDHPINSTDVFRKWGCSDSEIAKIFVRRPSLRRADPNLIQSKLNVLSLLGLTSADLVKIINCRPRFLSCRINRCFDERIEFFLELFGSRDFLRKAIVRNPSLLIYDLNSKIKRVVELYEGMGVARKDFILMVSSRPTMISRTSFNDEKLEYIRRTGVSKKSKMYKYVVVLMGISRLETIREKVGNLEKFGFSEDEVLGLFGRSPLVLTLSVDKVQRNMTYVLGTMKLPARAVLDCPFLLYANLEVVLKPRFLLAGKIEEMGLAPQIKGPKLFRALRMKEDRFLGAFVTCHPESLSNALMEYYRNMKGLKRLAVASKKNLRQGFPF* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1352 410 PANTHER CGI-12 PROTEIN-RELATED 88 375 IPR003690 GO:0003690|GO:0006355
Vvi19g1352 410 FunFam Mitochondrial transcription termination factor family protein 160 381 - -
Vvi19g1352 410 Gene3D Transcription termination factor 3, mitochondrial 160 382 IPR038538 -
Vvi19g1352 410 Pfam mTERF 154 368 IPR003690 GO:0003690|GO:0006355
Vvi19g1352 410 Pfam mTERF 94 168 IPR003690 GO:0003690|GO:0006355
Vvi19g1352 410 SMART mt_12 107 137 IPR003690 GO:0003690|GO:0006355
Vvi19g1352 410 SMART mt_12 178 209 IPR003690 GO:0003690|GO:0006355
Vvi19g1352 410 SMART mt_12 246 277 IPR003690 GO:0003690|GO:0006355
Vvi19g1352 410 SMART mt_12 142 174 IPR003690 GO:0003690|GO:0006355
Vvi19g1352 410 SMART mt_12 314 348 IPR003690 GO:0003690|GO:0006355
Vvi19g1352 410 SMART mt_12 214 243 IPR003690 GO:0003690|GO:0006355
Vvi19g1352 410 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1352 Vvi-Chr19 22546264 22547496 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi19g1352 mTERF 2.1e-30 No_clan