Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi19g1351 | ATGAAAACCAAAACCCACTTCCTATTCTCGGTTTCAAGAAGTGTTTTCAACACAATTCCCAAAACCCCAGTTGGAAAAACTAGGCAATGGGCACCGGTTAGTACAATTACCACCGCTTCTGCTTTGATCAATGAAACACCAGTTGAAAATTTTGCGGAACAAGTTAAGGATGATGACCTCAAAACCTCTAATGCTGGTTCGAGGAGATGGGGCTGTTTGGATGGTGATATAGCTAAGGTATTCTTGCAACAACAACACACAGACTATGGCATTCGATGCCTTAATGCGGTGAATTTTCCTCTGAAGGGTTTCTCAGAGATCACCAGCCAGATGGCTGGAAAAGCATTGCATGCATTTTGCATAGTGGGTTCAGTCAATCTCGGCATTTTTCAAACTAATACATTGATTAATATGTACTCAAAGTTCGGTAATATTGAGCATGCTCGTTATGTGTTTGATGAAATGCGTCATAGAAATGAGGCTTCTTGGAGCACTATGTTATCGGGTTATGTCCGTGTGGGTTTGTATGAAGAGGCAGTTGGGTTGTTTTGTCAAATGTGGGGCCTGGGAGTTGAGCCAAATGGTTTTATGGTTGCTAGTTTGATTACTGCATGCAGTAGGTCGGGGTATATGGCTGATGAAGGATTTCAAGTCCATGGTTTTGTTGTTAAGACTGGTATTTTAGGTGATGTGTATGTGGGAACTGCACTTGTGCATTTTTATGGCTCAATTGGGCTTGTTTATAATGCCCAGAAGCTCTTTGAGGAGATGCCTGATCATAATGTAGTTTCTTGGACCTCATTAATGGTTGGGTATTCAGACAGTGGAAATCCAGGGGAAGTTTTAAATGTATATCAAAGAATGAGGCAGGAAGGGGTTAGTGGCAATCAAAACACATTTGCAACGGTGACTAGTTCTTGTGGTTTGCTCGAGGATCAAGTTTTGGGTTATCAAGTTCTTGGACACATTATACAGTATGGATTCGAGGATAGCGTTTCTGTGGCAAACTCTCTCATATCGATGTTCTCTAGTTTTAGTAGTGTGGAAGAAGCCTGCTATGTCTTTGATCACATGAATGAATGTGACATTATATCATGGAATGCAATGATTTCTGCATATGCACATCATGGACTTTGTAGGGAATCACTTAGATGTTTTCATTGGATGCGACATCTACATAATGAAACAAATTCCACTACTCTCTCAAGTTTGTTGTCGGTCTGTAGTTCTGTGGATAATCTGAAGTGGGGGAGAGGAATTCATGGTTTGGTAGTTAAATTGGGACTGGACTCAAATGTTTGTATATGCAATACTCTTCTTACATTGTATTCTGAGGCTGGAAGATCAGAAGATGCAGAGTTGGTGTTTCAAGCAATGACGGAAAGGGATTTAATCTCATGGAATTCCATGATGGCTTGCTATGTTCAGGATGGAAAGTGCCTAGATGGACTAAAAATTTTGGCTGAACTTCTTCAGATGGGAAAAGTGATGAACCATGTGACATTCGCAAGTGCATTGGCTGCATGTTCAAACCCTGAATGTCTCATTGAAAGCAAGATTGTCCATGCTCTCATAATTGTTGCAGGCTTCCATGATTTTTTGATTGTTGGTAATGCATTAGTTACCATGTATGGTAAACTTGGTATGATGATGGAAGCAAAAAAGGTATTGCAGACAATGCCCCAGCCTGACAGGGTTACTTGGAATGCTCTCATTGGTGGTCATGCTGAGAATGAAGAACCAAATGAGGCTGTAAAAGCTTATAAATTGATAAGAGAAAAAGGCATTCCTGCAAATTACATTACCATGGTAAGTGTTCTTGGTGCTTGCTCGGCTCCTGATGATCTCCTCAAACATGGGATGCCCATCCATGCACATATAGTTCTGACTGGATTTGAATCAGATGATTATGTGAAGAATTCTCTCATCACAATGTATGCTAAGTGTGGTGATCTCAATTCAAGTAATTACATCTTTGATGGATTAGGTAATAAGAGCCCTATCACATGGAATGCCATGGTTGCTGCAAATGCTCATCATGGCTGTGGGGAGGAAGCTCTAAAAATTTTTGGGGAGATGCGAAATGTGGGAGTAAATTTAGATCAATTCAGCTTCTCTGGAGGCCTTGCTGCGACTGCCAACCTGGCTGTATTGGAGGAAGGTCAACAGCTTCATGGATTGGTTATTAAACTTGGGTTTGAATCAGATCTCCATGTTACCAATGCGGCAATGGATATGTATGGTAAGTGTGGGGAAATGCATGATGTGCTGAAAATGCTTCCCCAACCAATCAACAGGTCACGATTATCATGGAACATACTGATATCAGCTTTTGCCAGACATGGGTGTTTTCAGAAAGCTAGAGAGACTTTTCATGAAATGCTTAAACTGGGTCCAAAACCTGACCATGTCACATTTGTCTCTCTTCTATCTGCTTGCAATCATGGGGGTCTAGTGGATGAGGGTCTTGCATATTATGATTCAATGACTAGGGAGTTTGGGGTCTTTCCAGGAATAGAGCATTGTGTATGCATAATTGATCTTCTTGGACGATCAGGAAGACTTTCTCATGCCGAAGGCTTTATCAAAGAAATGCCAGTCCCACCAAATGACCTTGCATGGCGGAGCTTGTTGGCTGCATGTAGAATCCATGGCAATTTGGAGCTTGCAAGGAAAACTGCAGAACATCTTTTGGAATTGGACCCATCAGATGACTCAGCTTATGTCCTGTATTCAAATGTCTGTGCTACTAGTGGGAAATGGGAGGATGTGGAGAATCTCAGGAAAGAAATGGGATCAAATAACATAAAGAAGCAGCCTGCATGCAGTTGGGTCAAATTGAAAGACAAAGTTCATTCATTTGGGATGGGAGAAAAGTATCACCCACAGGCCAGCCGGATAAGTGCAAAGCTGGGAGAGCTTATGAAGATGACCAAAGAAGCAGGTTATGTCCCTGATACTAGCTTTGCATTACATGATATGGATGAGGAACAAAAGGAGTACAACCTTTGGAACCACAGTGAAAGACTTGCCCTTGCATTTGGGTTGATCAATACGCCAGAAAGTTCAACTCTCAGAATTTTTAAGAATCTCCGGGTATGCGGTGATTGTCATTCCGTTTACAAGTTTGTTAGTGGAATTGTTGGGCGGAAAATTGTGTTGAGGGATCCTTATCGATTCCATCATTTTAGTGGTGGCAAGTGTTCTTGTGGTGACTATTGGTAA | 3225 | 0.4152 | MKTKTHFLFSVSRSVFNTIPKTPVGKTRQWAPVSTITTASALINETPVENFAEQVKDDDLKTSNAGSRRWGCLDGDIAKVFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW* | 1075 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi19g1351 | 1074 | Gene3D | Tetratricopeptide repeat domain | 617 | 726 | IPR011990 | GO:0005515 | |
| Vvi19g1351 | 1074 | FunFam | Pentatricopeptide repeat-containing protein chloroplastic | 416 | 515 | - | - | |
| Vvi19g1351 | 1074 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 362 | 396 | IPR002885 | - | |
| Vvi19g1351 | 1074 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 767 | 801 | IPR002885 | - | |
| Vvi19g1351 | 1074 | FunFam | Pentatricopeptide repeat-containing protein At4g02750 | 761 | 965 | - | - | |
| Vvi19g1351 | 1074 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 432 | 466 | IPR002885 | - | |
| Vvi19g1351 | 1074 | FunFam | Tetratricopeptide repeat (TPR)-like superfamily protein | 618 | 760 | - | - | |
| Vvi19g1351 | 1074 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 101 | 216 | IPR046960 | GO:0003723|GO:0009451 | |
| Vvi19g1351 | 1074 | FunFam | Pentatricopeptide repeat-containing protein chloroplastic | 517 | 617 | - | - | |
| Vvi19g1351 | 1074 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 564 | 598 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | DYW family of nucleic acid deaminases | 982 | 1074 | IPR032867 | GO:0008270 | |
| Vvi19g1351 | 1074 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 159 | 193 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Gene3D | Tetratricopeptide repeat domain | 108 | 215 | IPR011990 | GO:0005515 | |
| Vvi19g1351 | 1074 | Gene3D | Tetratricopeptide repeat domain | 315 | 416 | IPR011990 | GO:0005515 | |
| Vvi19g1351 | 1074 | Gene3D | Tetratricopeptide repeat domain | 420 | 519 | IPR011990 | GO:0005515 | |
| Vvi19g1351 | 1074 | Gene3D | Tetratricopeptide repeat domain | 520 | 616 | IPR011990 | GO:0005515 | |
| Vvi19g1351 | 1074 | Gene3D | Tetratricopeptide repeat domain | 216 | 314 | IPR011990 | GO:0005515 | |
| Vvi19g1351 | 1074 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 666 | 700 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | E motif | 884 | 945 | IPR046848 | - | |
| Vvi19g1351 | 1074 | SUPERFAMILY | TPR-like | 771 | 924 | IPR011990 | GO:0005515 | |
| Vvi19g1351 | 1074 | Gene3D | Tetratricopeptide repeat domain | 759 | 961 | IPR011990 | GO:0005515 | |
| Vvi19g1351 | 1074 | FunFam | Pentatricopeptide repeat-containing protein | 110 | 212 | - | - | |
| Vvi19g1351 | 1074 | FunFam | Pentatricopeptide repeat-containing protein | 314 | 415 | - | - | |
| Vvi19g1351 | 1074 | NCBIfam | pentatricopeptide repeat | 133 | 158 | IPR002885 | - | |
| Vvi19g1351 | 1074 | NCBIfam | pentatricopeptide repeat | 770 | 802 | IPR002885 | - | |
| Vvi19g1351 | 1074 | NCBIfam | pentatricopeptide repeat | 263 | 296 | IPR002885 | - | |
| Vvi19g1351 | 1074 | NCBIfam | pentatricopeptide repeat | 435 | 463 | IPR002885 | - | |
| Vvi19g1351 | 1074 | NCBIfam | pentatricopeptide repeat | 668 | 701 | IPR002885 | - | |
| Vvi19g1351 | 1074 | NCBIfam | pentatricopeptide repeat | 162 | 194 | IPR002885 | - | |
| Vvi19g1351 | 1074 | NCBIfam | pentatricopeptide repeat | 566 | 599 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat family | 770 | 813 | IPR002885 | - | |
| Vvi19g1351 | 1074 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | IPR002885 | - | |
| Vvi19g1351 | 1074 | FunFam | Pentatricopeptide repeat-containing protein chloroplastic | 213 | 313 | - | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 435 | 463 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 235 | 261 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 133 | 158 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 538 | 560 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 364 | 387 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 844 | 865 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 263 | 293 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 336 | 362 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 668 | 698 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 162 | 191 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 566 | 596 | IPR002885 | - | |
| Vvi19g1351 | 1074 | Pfam | PPR repeat | 465 | 494 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi19g1351 | Vvi-Chr19 | 22537945 | 22541169 | Dispersed/Tandem |