Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi19g1350 | ATGTTTTCAAAGATTCAATCAGCATGCAATTTGGGAAGATTAGCAGAAGCGCTGAAACTCTTGTCCTCAAACCCAACTCGCTTAGACCCCTCTTTGTATTTGAAAATTTTGCAGCTTTGTATTGACAAAAAAGCTAAAAAGCAAGGCCATTTGATTCACACCCATCTCATAACAAATGGGTTTGGCTCAGATTTGCACTTAAACACCAAACTCATAATCTTTTATGTGAAAGTGGGTGATGTAATTGCTGCTCGCAATGTGTTTGATGGAATGCCTGAGAGGAGTGTTGTTTCTTGGACTGCTATGGTATCTGGGTATTCCCAAAATGGGCGTTTTGAAAAGGCTTTTGTGCTGTTTTCAGATATGCGGCATTGTGGTGTTAAGGCGAACCAGTTTACATATGGGAGTGCTTTGAGGGCTTGCACTAGTTTGAGGTGTTTGGACATGGGGATACAGGTACAAGGGTGTATTCAGAAGGGAAGGTTTGTTGAGAATCTGTTTGTGAAGAGTGCATTGGTTGATTTTCATTCCAAGTGTGGGAAGATGGAGGATGCATCTTATTTGTTTGGGACGATGATGGAAAGAGATGTGGTTTCATGGAATGCAATGATTGGTGGGTATGCTGTCCAGGGATTTGCTGATGATTCATTCTGTATGTTCCGCTCGATGCTTAGAGGAGGTCTGGTGCCTGATTGCTACACCCTGGGTAGTGTTCTGAGAGCCTCAGCTGAAGGTGGTGGTCTCATTATAGCCAATCAAATACATGGAATCATCACCCAATTGGGGTATGGATCATATGATATTGTAACTGGATTGTTGATCAATGCATATGCAAAAAATGGAAGTTTGAGAAGTGCCAAAGATTTACGCAAGGGTATGCTTAAAAAGGATCTATTTTCTTCCACTGCATTGATCACTGGATATGCACATGAGGGCATCTATAGTGTAGATGCCTTGGACCTCTTCAAAGAAATGAATCAGATGAACATAGGAATGGATGATGTTATATTATGCTCCATGCTTAATATATGTGCCAATTTAGCATCATTCGCTTTGGGTACACAGATACACGCCTTTGCATTAAAATATCAACCTAGTTATGATGTAGCCATGGGCAATGCTCTCATTGATATGTATGCTAAATCTGGAGAGATCGAAGATGCTAAACGAGCTTTTGATGAGATGGAAGAGAAAAATGTGATTTCTTGGACATCATTAATTTCTGGATATGCAAAACATGGGTATGGGCACATGGCTGTTTCACTATATAAGAAAATGGAAAGCAAAGGGTTTAAACCAAATGATGTTACATTTTTGTCCCTTCTTTTTGCTTGCAGCCATACTGGATTAACTGCTGAAGGATGTGAATGCTTCAATAATATGGTTAACAAATACAATATCAAGCCCAGAGCTGAGCATTATTCTTGCATGGTAGATCTCTTTGCACGTCAAGGGCTGTTAGAAGAAGCCTATAATTTGTTATGCAAGATAGATATTAAGCATAATGCCTCTCTTTGGGGTGCAATTCTAGGGGCATCTAGCATCTATGGCTATATGTCTCTTGGCAAAGAAGCAGCCAGTAATCTTTTTAATATGCAACCCGAGAATTCTGTCAACTATGTTGTTCTAGCAAGTATATATTCTGCTGCTGGCCTGTGGGATGATGCTTGGAAGATAAGAAAATTGATGGAAGAGAGAAGTACAAAAAAGAATGCAGGCTATAGTTTTTTCCAAGCAACAAAGAAGAGCATACCGCTACTGCAGGCTAGTTGA | 1773 | 0.4005 | MFSKIQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKKSIPLLQAS* | 591 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi19g1350 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 399 | 433 | IPR002885 | - | |
| Vvi19g1350 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 297 | 332 | IPR002885 | - | |
| Vvi19g1350 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 196 | 230 | IPR002885 | - | |
| Vvi19g1350 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 95 | 129 | IPR002885 | - | |
| Vvi19g1350 | 590 | FunFam | Os04g0488200 protein | 91 | 150 | - | - | |
| Vvi19g1350 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 368 | 398 | IPR002885 | - | |
| Vvi19g1350 | 590 | NCBIfam | pentatricopeptide repeat | 198 | 232 | IPR002885 | - | |
| Vvi19g1350 | 590 | NCBIfam | pentatricopeptide repeat | 373 | 400 | IPR002885 | - | |
| Vvi19g1350 | 590 | NCBIfam | pentatricopeptide repeat | 401 | 434 | IPR002885 | - | |
| Vvi19g1350 | 590 | NCBIfam | pentatricopeptide repeat | 97 | 130 | IPR002885 | - | |
| Vvi19g1350 | 590 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 33 | 580 | IPR046960 | GO:0003723|GO:0009451 | |
| Vvi19g1350 | 590 | Pfam | PPR repeat family | 95 | 141 | IPR002885 | - | |
| Vvi19g1350 | 590 | Pfam | PPR repeat family | 398 | 445 | IPR002885 | - | |
| Vvi19g1350 | 590 | Pfam | PPR repeat family | 195 | 241 | IPR002885 | - | |
| Vvi19g1350 | 590 | Pfam | PPR repeat | 272 | 297 | IPR002885 | - | |
| Vvi19g1350 | 590 | Pfam | PPR repeat | 473 | 496 | IPR002885 | - | |
| Vvi19g1350 | 590 | Gene3D | Tetratricopeptide repeat domain | 13 | 146 | IPR011990 | GO:0005515 | |
| Vvi19g1350 | 590 | Gene3D | Tetratricopeptide repeat domain | 350 | 453 | IPR011990 | GO:0005515 | |
| Vvi19g1350 | 590 | Gene3D | Tetratricopeptide repeat domain | 147 | 249 | IPR011990 | GO:0005515 | |
| Vvi19g1350 | 590 | Gene3D | Tetratricopeptide repeat domain | 265 | 349 | IPR011990 | GO:0005515 | |
| Vvi19g1350 | 590 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 370 | 589 | - | - | |
| Vvi19g1350 | 590 | Pfam | E motif | 520 | 576 | IPR046848 | - | |
| Vvi19g1350 | 590 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 151 | 250 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi19g1350 | Vvi-Chr19 | 22530547 | 22533239 | Transposed |