Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1348 ATGGCGAAAACCGTGAACCTCAAGAGCTCTGACGGCCATATCTTCACCGTTGAAGAGGCAGTGGCGTTAAAATGCCACACTATCAGGAATGTTGTTGAAGACACCGGCGATGATGAAGTATTATTACCAAAGGTGAATGGTAGAACCCTGGCTAAAGTGATGGAGTACTGTGAGAAGCATGCGAAGGAACCCTCTGGATTGGATCAGAAGGAGGTGGATGAGATGAAGAAGTGGGACATGGAGTTCGTGGACGTGGATCAAGCTGTTTTGTATGACATGCTCATGGCAGCCAATTATTTGAGTATAGCAGGGTTGATTGAGTTGATATGCATGAAGGCTGCTGACATGATCCGTGGGAAGAGTCCCGAGCAAATTCGGGAGATTTTCAAGATTGAGAACGATTTTACAAAAGAGGAGGAGGCCAAGATTCGGGGAGAAAATGCATGGGCATTTGAATAA 459 0.4597 MAKTVNLKSSDGHIFTVEEAVALKCHTIRNVVEDTGDDEVLLPKVNGRTLAKVMEYCEKHAKEPSGLDQKEVDEMKKWDMEFVDVDQAVLYDMLMAANYLSIAGLIELICMKAADMIRGKSPEQIREIFKIENDFTKEEEAKIRGENAWAFE* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1348 152 CDD BTB_POZ_SKP1 4 117 - -
Vvi19g1348 152 SMART skp1_3 2 102 IPR001232 GO:0006511
Vvi19g1348 152 FunFam E3 ubiquitin ligase complex SCF subunit 1 152 - -
Vvi19g1348 152 Pfam Skp1 family, dimerisation domain 104 150 IPR016072 GO:0006511
Vvi19g1348 152 SUPERFAMILY POZ domain 4 62 IPR011333 -
Vvi19g1348 152 Gene3D Potassium Channel Kv1.1; Chain A 1 152 IPR011333 -
Vvi19g1348 152 PANTHER SKP1 2 149 IPR016897 GO:0006511
Vvi19g1348 152 SUPERFAMILY Skp1 dimerisation domain-like 75 150 IPR036296 GO:0006511
Vvi19g1348 152 Pfam Skp1 family, tetramerisation domain 4 61 IPR016073 GO:0006511
Vvi19g1348 152 PIRSF SCF_Skp 1 152 IPR016897 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1348 Vvi-Chr19 22520035 22520493 Dispersed/Tandem