Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1347 ATGACCAAAATCGTGACCCTCAAGAGCTCCGACGGTCAGACCTTTGCCGTGGACGAGGCGGTGGCGCTGAAGTCTTCAACAATCAAGAACATTCTTGAAGACACTGGCGCAGTTGAAAACAACGCAGTTTCGGTGCCATCGGTGGATGGCAAAACCCTTGCTAAAGTGATCGAGAACTGCAACAAACACGCGAAGGAGCCCAGCGGATTGGATGAGAAGGCGGAGGTGGATGAGATGGAGAAGTGGGATGCCGAGTTTGTGTACTTGTTGGATCGAGAGTTTTTCTTTGATGTAGCCTTGGGCGCTTATTTTCTTAATATACGAGGGTTGATTGATTTGACATGCGGGAAGATAGCTGACATGACTCGGGGTAAGACTGTCGAACAGATGCGGGAGATTTTGAACCTCGAGAATGATTTTACCGTAGAGGAGGAGGCTGAGATAAGGAGAAAAAAAAAATGCTTGGGCATTTGA 474 0.481 MTKIVTLKSSDGQTFAVDEAVALKSSTIKNILEDTGAVENNAVSVPSVDGKTLAKVIENCNKHAKEPSGLDEKAEVDEMEKWDAEFVYLLDREFFFDVALGAYFLNIRGLIDLTCGKIADMTRGKTVEQMREILNLENDFTVEEEAEIRRKKKCLGI* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1347 157 SUPERFAMILY POZ domain 4 67 IPR011333 -
Vvi19g1347 157 PIRSF SCF_Skp 1 155 IPR016897 GO:0006511
Vvi19g1347 157 FunFam E3 ubiquitin ligase complex SCF subunit 1 156 - -
Vvi19g1347 157 SUPERFAMILY Skp1 dimerisation domain-like 80 151 IPR036296 GO:0006511
Vvi19g1347 157 Pfam Skp1 family, tetramerisation domain 4 64 IPR016073 GO:0006511
Vvi19g1347 157 SMART skp1_3 2 107 IPR001232 GO:0006511
Vvi19g1347 157 Gene3D Potassium Channel Kv1.1; Chain A 1 155 IPR011333 -
Vvi19g1347 157 PANTHER SKP1 2 152 IPR016897 GO:0006511
Vvi19g1347 157 Pfam Skp1 family, dimerisation domain 109 153 IPR016072 GO:0006511
Vvi19g1347 157 CDD BTB_POZ_SKP1 4 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1347 Vvi-Chr19 22516711 22517184 Tandem