Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1344 ATGTATCGAATCCTTTACTTCCTCTTCTTTCTCTCATATTCCCGAGTTATTTGTTTCTCTTTCTCTAATTCTACGAAGCTGTGTCCTCATCACCAGAATGTTGCTTTGCTTCGACTTAAGCAAACATTTTCCGTAGATGTTTCCGCTTCTTTTGCCAAGACAGACACTTGGAAGGAAGACACTGATTGTTGCTCATGGGATGGTGTCACATGCAATAGGGTTACAAGCCTTGTAATCGGGCTCGACCTTAGTTGCAGTGGCCTCTATGGCACCATTCATTCCAACAGCAGCCTCTTCCTCTTGCCTCATCTACGAAGGCTCAACCTTGCTTTCAATGATTTCAATAAGTCCTCTATTTCAGCTAAGTTTGGACAATTCCGGAGAATGACTCATCTCAACCTTTCTTTCTCTGGATTTTCAGGTGTAATTGCTCCAGAAATCTCCCACCTATCCAACTTGGTTTCGCTTGATCTCTCCATCTATAGTGGATTAGGACTTGAAACAAGTAGCTTCATTGCACTTACTCAAAACCTAACGAAGTTGCAGAAACTTCATCTCCGAGGTATAAATGTCTCTTCCATTTTGCCTATCTCCCTACTGAATTTATCTTCTTTGAAATCTATGGATCTCTCTTCCTGTCAACTGCATGGGAGATTCCCTGATGATGATCTTCAGCTGCCCAACCTTAAGGTTCTCAAGTTAAAGGGTAACCATGATCTCAGTGGGAATTTCCCAAAGTTCAATGAGAGTAATTCCATTCTGTTGTTGGATCTTTCTTCAACAAATTTCAGTGGGGAGCTTCCTAGTTCAATAAGCATTCTAAAGTCTTTAGAAAGTTTGGATCTCTCTCACTGCAATTTTTCAGGGTCCATTCCCTTGTTCATAGCGTCACTTGACAATCTAACAGAACTTTCTTTCTTAGACCTTTCAAACAATAAGCTAGAAGGTGTCATTCCTTCTCATGTGAAGGAACTTTCAAGTCTATCCTCTGTCCATTTGTCCAATAACTTGTTCAATGGGACAATACCATCTTGGTTGTTTAGTCTACCATCATTGATAGAGTTAGATCTCAGTCATAATAAACTCAATGGTCATATTGATGAATTCCAATCCCCTTCATTGGAGTCCATTGATTTGAGTAATAATGAGTTAGATGGGCCAGTTCCAAGTTCCATCTTTGAACTTGTAAATCTTACATATCTCCAGCTTTCTTCAAATAACTTGGGTGGCATTGTGGAGACAGACATGTTCATGAATCTTGAAAATCTTGTCTATCTCGATCTTTCATATAACATTCTGACATTGAGCAACTACAACCATTCCAACTGTGCACTACCATCCTTGGAAACATTGTTGTTGTCTTCTTGCGACATAAGTGAATTCCCAAGATTTTTATGCAGTCAAGAGTTATTGGCATTTTTAGATCTTTCAAACAACAAGATTTATGGACAACTTCCGAAATGGGCATGGAATGTGGGTACGGAGACACTGTCTTACTTAAATCTTTCTCAAAACATGCTAACCAGGTTTGAGAGATTTCCATGGAGGATTATGCAATATCTCGACCTTCATTCCAACTTGCTTCAAGGGCCACTTCCATCATTGATTTGTGAAATGAGTTATATTGAAGTTTTAGATTTCTCCAATAACAACTTGAGTGGCTTAATTCCACAATGTTTGGGAAACTTCAGTAAGTCTTTCTCAGTTTTGGATTTGCGAATGAATCAACTTTATGGTACCATTCCTAAAACGTTTTCAAAGGGCAATCTTATCAGGAATCTTGACTTCAATGGAAATCAATTGGAAGGGCCTCTACTACGATCTTTGATCAATTGTAGAAGGTTGCAAGTTTTAGACCTTGGAAATAACAGAATAAATGATACATTCCCCCATTGGTTGGAAACTCTTCCGGAGTTACAAGTTTTGATCTTGCGTTCAAATAGGTTCCATGGTCACGTAAGGGGTTCAAATTTCCAATTTCCATTTCCCAAGTTACGAATAATGGATCTCTCACGCAATGGTTTCTCTGCCAGTTTATCGAAAATATATTTGAAGAATTTCAAGGCAATGATGAATGCGACTGAGGATAAAATGGAATTAAAATTTATGGGCGAATACTCTTATCGAGATTCAATAATGGTAACAATCAAAGGATTTGATTTTGAATTTGTAAGTATCTTGTTTACTTTCACAATAATTGATTTGTCAAGCAATAGATTCCAAGGAGACATTCCAGATTTCATTGGTAGTCTTAGTTCACTTCGAGAACTCAACTTGTCTCATAACAACATTACAGGGCATATTCCATAA 2310 0.3814 MYRILYFLFFLSYSRVICFSFSNSTKLCPHHQNVALLRLKQTFSVDVSASFAKTDTWKEDTDCCSWDGVTCNRVTSLVIGLDLSCSGLYGTIHSNSSLFLLPHLRRLNLAFNDFNKSSISAKFGQFRRMTHLNLSFSGFSGVIAPEISHLSNLVSLDLSIYSGLGLETSSFIALTQNLTKLQKLHLRGINVSSILPISLLNLSSLKSMDLSSCQLHGRFPDDDLQLPNLKVLKLKGNHDLSGNFPKFNESNSILLLDLSSTNFSGELPSSISILKSLESLDLSHCNFSGSIPLFIASLDNLTELSFLDLSNNKLEGVIPSHVKELSSLSSVHLSNNLFNGTIPSWLFSLPSLIELDLSHNKLNGHIDEFQSPSLESIDLSNNELDGPVPSSIFELVNLTYLQLSSNNLGGIVETDMFMNLENLVYLDLSYNILTLSNYNHSNCALPSLETLLLSSCDISEFPRFLCSQELLAFLDLSNNKIYGQLPKWAWNVGTETLSYLNLSQNMLTRFERFPWRIMQYLDLHSNLLQGPLPSLICEMSYIEVLDFSNNNLSGLIPQCLGNFSKSFSVLDLRMNQLYGTIPKTFSKGNLIRNLDFNGNQLEGPLLRSLINCRRLQVLDLGNNRINDTFPHWLETLPELQVLILRSNRFHGHVRGSNFQFPFPKLRIMDLSRNGFSASLSKIYLKNFKAMMNATEDKMELKFMGEYSYRDSIMVTIKGFDFEFVSILFTFTIIDLSSNRFQGDIPDFIGSLSSLRELNLSHNNITGHIP* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1344 769 ProSiteProfiles Leucine-rich repeat profile. 753 769 IPR001611 GO:0005515
Vvi19g1344 769 FunFam Cf2-like protein 26 121 - -
Vvi19g1344 769 SUPERFAMILY RNI-like 330 690 - -
Vvi19g1344 769 Gene3D Ribonuclease Inhibitor 437 769 IPR032675 -
Vvi19g1344 769 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Vvi19g1344 769 Gene3D Ribonuclease Inhibitor 26 121 IPR032675 -
Vvi19g1344 769 Gene3D Ribonuclease Inhibitor 122 370 IPR032675 -
Vvi19g1344 769 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 27 769 IPR046956 -
Vvi19g1344 769 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 268 366 - -
Vvi19g1344 769 Pfam Leucine Rich Repeat 276 295 IPR001611 GO:0005515
Vvi19g1344 769 Pfam Leucine Rich Repeat 543 563 IPR001611 GO:0005515
Vvi19g1344 769 SMART LRR_typ_2 662 685 IPR003591 -
Vvi19g1344 769 SMART LRR_typ_2 274 298 IPR003591 -
Vvi19g1344 769 SMART LRR_typ_2 445 468 IPR003591 -
Vvi19g1344 769 SMART LRR_typ_2 325 349 IPR003591 -
Vvi19g1344 769 SMART LRR_typ_2 636 659 IPR003591 -
Vvi19g1344 769 SMART LRR_typ_2 301 321 IPR003591 -
Vvi19g1344 769 SMART LRR_typ_2 395 419 IPR003591 -
Vvi19g1344 769 SMART LRR_typ_2 539 562 IPR003591 -
Vvi19g1344 769 SMART LRR_typ_2 202 226 IPR003591 -
Vvi19g1344 769 SMART LRR_typ_2 101 126 IPR003591 -
Vvi19g1344 769 PRINTS Leucine-rich repeat signature 349 362 - -
Vvi19g1344 769 PRINTS Leucine-rich repeat signature 304 317 - -
Vvi19g1344 769 SUPERFAMILY RNI-like 81 409 - -
Vvi19g1344 769 Gene3D Ribonuclease Inhibitor 371 436 IPR032675 -
Vvi19g1344 769 Pfam Leucine rich repeat 303 362 IPR001611 GO:0005515
Vvi19g1344 769 SUPERFAMILY L domain-like 724 769 - -
Vvi19g1344 769 Pfam Leucine Rich repeat 752 766 IPR001611 GO:0005515
Vvi19g1344 769 Pfam Leucine Rich repeat 102 117 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1344 Vvi-Chr19 22500178 22502622 Dispersed/Transposed