Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1339 ATGCAAAACCCCAACGAACTCTACACTTCTCTCGTCCGCCTCCAGCAAACCGATCAGCCATTGAAGGTTATGACCTCCTCAACCCCCACCATCTCCCTCGATCTCCACAACAACAACAACGACTCTACTTCCCTCAACTCCTCTATACCCAACATGCGTGCAGGAGAAGAAGTTGTGTCATCCTCATATATTCCAGAGATGCAAGAGCAAACCAAAACTTATTATCTATGTTTTGTTGCATTGTCTGTGTTCTCACTATTGGTAAATCTCAACCAACATTACAATTTTGCAGTAATGAGAGAGAATTTGACAAAGAGAGAGAGAGATGGTGTTTTCAAAGATACTGAACTCACCAAAGATGCGATTGTGGTAAGATCATTGGTGGGTGATCGTATGTCGCTTCTCGTCCAAACCTTGTCAGTTGTGATCATCTCTGGTACAATGGGTCTGGTTATCTCATGGAGACTGGTTGTGGTAATGATTGCAGTTCAACCCATCATGATTATCTCCCACTACACTCGACTGGTGCTGCTCAAAAGCATGTCTGCTAAGGCCATCAAGGCCCAAGAAGAAAGTAGCAAGCTTGCCACTAAATTTGTCTCCAACCTTCGCACCATAACCGTCTTCTCCTTCCAAGCCCGAATTCTCAAAATGCTCATGATAGCCCAACAAGGTCCCCTAAAGGAGAGTGTTCGTCAAGCTTGGATAGCTGGAATAGACCTAGGAACCTCCCAAAGCCTGTTGTCAGGTAGTTGGTTCACCCCCCCTACTGCCACAGCTGTAGATATAAGTATTTTGAGAATACGCCTTAACGACCAATGGTTAACGATGGCTCTAATGGGCGGTTTTGCTAGAATAGGCAATAATGAGATCATTGTTTTAGTAAATGATGCAGAGAAAGGTAGTGACATTGAGCCACAAGAAGCTCAACAAACTCTTGAAATAACAGAAGCTAACTTGAGGAAAATTGAAGGCAAGAGACAAATAATTGAGGCAAATCTAGCTCTTAGACGAGCTAGGACATGA 1026 0.4376 MQNPNELYTSLVRLQQTDQPLKVMTSSTPTISLDLHNNNNDSTSLNSSIPNMRAGEEVVSSSYIPEMQEQTKTYYLCFVALSVFSLLVNLNQHYNFAVMRENLTKRERDGVFKDTELTKDAIVVRSLVGDRMSLLVQTLSVVIISGTMGLVISWRLVVVMIAVQPIMIISHYTRLVLLKSMSAKAIKAQEESSKLATKFVSNLRTITVFSFQARILKMLMIAQQGPLKESVRQAWIAGIDLGTSQSLLSGSWFTPPTATAVDISILRIRLNDQWLTMALMGGFARIGNNEIIVLVNDAEKGSDIEPQEAQQTLEITEANLRKIEGKRQIIEANLALRRART* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1339 341 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 76 251 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g1339 341 SUPERFAMILY ABC transporter transmembrane region 70 252 IPR036640 GO:0005524|GO:0016020
Vvi19g1339 341 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 61 253 IPR039421 -
Vvi19g1339 341 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 256 299 IPR036771 -
Vvi19g1339 341 Gene3D - 260 304 IPR036771 -
Vvi19g1339 341 Gene3D ABC transporter type 1, transmembrane domain 56 259 IPR036640 GO:0005524|GO:0016020
Vvi19g1339 341 Coils Coil 313 333 - -
Vvi19g1339 341 Hamap ATP synthase epsilon chain [atpC]. 214 341 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vvi19g1339 341 Gene3D - 306 341 - -
Vvi19g1339 341 Pfam ABC transporter transmembrane region 116 249 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1339 Vvi-Chr19 22403825 22405064 Proximal