Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1334 ATGGGGAGAAATATCGGGTCTGTCCGGTCCATTTTCATGCATGCCGACACCGCAGATTATTGTTTGATGGCTTTTGGTTTGCTCGGAGCCATCTGTGCTGGGCTTTACAGGCCGACACTTTTGTTTGTGGTCAACAAGATTATGAACAATATCGGCAGTGCCTCCACTTCCGGTGATGCCTTCTCCCATAAAATCAATCAGAATGCCCTGATACTGCTGTACATTGCTTGTGGGTCATGGGTGCCTTTTTTCCTTGAGGGTTATTGCTGGTCAAGAACTGCCGAGAGACAAGCTACAAGGATGAGAAGTAGATATATGAAAGCACTGTTGAGGCAGGACGTGGAGTATTTTGATTTGCATGTGACCGGCACAGCAGAGGCCATCAGTAGCGTCTCCGAGGATAGTCTCGTGATTCAAGACGTTATTAGCGAAAAGGTCCCAAACTTGTTGATAAACGCTGCATCTTTTGTAGGGTGCTACATAGTAGCTTTCGCTATGCTGTGGAGGCTAGCTATTGTAGGCGTTCCCTTTGTCGTTCTGCTTGTGATTCCTGGTTTCATATATGGACGTGCACTGATGAACCTGGCCAGGAAGATGAAGGAAGAGTACAGCAAGGCTGCCACAATAGCAGAGCAGGCCATCTCTTCTATAAGAACTGTTTACTCCTTCGTGGGAGAGAGAAAAACTCAGTCTGCCTTCTCTGCAGCTCTGCAAGGCCCCTTTAAATTGGGTCTGCGCCAGGGTGTGGCCAAGGGTTTGGCCATTGGCGGCAATGGGGTGGTTCTTGGAATATGGGCGTTCATGTGTTGGTACGGTAGTAGATTGGTGATGTATCATGGCGCTCAGGGAGGAACCGTTTTTGCTACTGGGGCTGTCATGGCCATTGGTGGATTATCACTAGGCCCCGGATTATCCAACCTTCAGTACTTGTCGGAAGCATGCACCGCGGGAGAGCGAATAATGGAGGTGATAAAAAGGGTCCCAAAGATAGATTCTGACAACATGGAAGGCCAAACCTTGGAAAACCTGTGTGGGGAAGTGGAATTCAAGCACGTTCAATTTGCATATCCGTCATCCCCAGAGATAACAATCTTTAAAGATTTCAGCCTCAAAATCCCGACGGGCAAAAAGGTGGCGTTGGTGGGTAGCAGCGGGTCGGGAAAGTCCACAGCAGTAGCTTTGCTGCAGAGGTTTTATGATCCCCTTGGTGGGGAGATTCTGCTTGATGGGGTCGCCATTGATAAGCTACAACTCAAGTGGCTAAGGTCGCAGATGGGGTTAGTGAGCCAAGAACCATCACTTTTTGCCACCACCATTGAAGAGAACATACTTTTCGGCAAGGAAGACGCTACCATGGAAGAAGTAGTTGCTGCAGCCGAAGCTGCTCATGCTCATCATTTTATTTGTGAGTTGCCTGATGGATATGATACTCAAGTGGGGGAGAGAGGAGTTCAAATGTCCGGAGGGCAGAAGCAGAGAATCGCCATTGCAAGAGCAGTCATCAAAGCCCCGCGAATACTCCTCCTAGACGAGGCAACCAGCGCTCTTGATTCCGAGTCCGAGCGAGTGGTCCAAGAGGCGCTTGACAGCGCTGCCCTTGGCCGCACAACCATCATCATCGCCCACCGCCTGTCCACCATCCGTAATGCCGACATTATTGCTGTGGTACAGGATGGTCACATAGTAGAGACCGGCCCTCATGACCAACTCATTCAAAACCCCGCTGGACTCTACACTTCCCTGGTTCGCCTCCAGCAAGCCGATCAGCCATGGAAGGCTGTGACATCCTTAACCCCCGCCACCTCCCTGTATCTCCATACCACTAGCAGCAACTCCACTCCCCCCAACTCCCCTTTACACAGCATGCCCGCAGGAGAAGAAGCTGCCACTGTTACCTCGGGCATTCCAGTGCCGTCATTCTGGAGACTGCTCGCAATGAACTATCCTGAGTGGAAGGAAGCCAGCATAGGATGTTTGAGCGCGGTTTTGTCCGGTGCGATTCAGCCGCTCTACGCGTTCTCCATGGGATCAATGATATCCGTATATTTCTTACCTGACCATGAGGAGATGAAGAAGCATACCAGAATTTATTCTGTGTGTTTTTTCGCGTTGTTTGTGCTCTCGTTGCTGTCAAATATCTGCCAACATTACAGTTTTGCTGCAATGGGAGAGAATTTGACAAAGAGAGTGAGAGAGATGATGTTCTCCAAGATTCTTAGTTTTGAAGTGGGGTGGTTCGACCAAGACGACAACTCCACCGGTGCTATCTGCTTCAGACTTGCCAAAGATGCGACTGTGGTAAGATCATTAGTGGGTGATCGAATGTCACTTATCGTCCAAACCTTTTCAGCTGTGACCATCTCGGGCACAATGGGTCTGATCATCGCGTGGAGATTGGCTATGGTCATGATTGCAATTCAACCCCTCATGATTATCTCATTCTACACCCGAACGGTGCTACTCAAGAGTATGTCTGCCAAGGCAATCAAGGCCCAAGAAGAAAGCGGCAAGCTCGCCGCTGAAGCTGTCTCCAACCTTCGCACCATCACTGCCTTCTCATCCCAGGCCCGAATTCTCAAAATGCTGGAGGTCGCCCAAGAAGGACCCATACAGGAGAGTATACGCCAGGCCTGGTTCTCAGGAATAGCTTTAGGAATTTCCCAAAGTCTCTTGTCATGTAGTTGGGCTCTTGACTTCTGGTACGGTGGCAAATTACTCTCCCACGGGTATATCTCATCAAAAGCATTCTTACAGACTTTTATGATCCTAGTTAGCACAAGTCGTGTCATCGCGGATGCAGGAAGCATGACCAATGACCTTGCCAAGGGCATCGATGCTATTCGCTCCGTTTTTGCCATCCTTGACCGCCTCACCCAAATCCAACCTGAAAACCCAGATAGCTACCAACCCGAAAAAATAAGAGGTCATGTTCAAATTCAAGAAGTGGACTTCGCTTATCCAGCTAGGCCCAACGCCTTCATTTTTAAGGGTTTCTCAATCGACATAGACCCTGGGAAATCAACTGCATTGGTAGGAGAGAGTGGGTCAGGCAAATCAACCATCATTGGGTTGATAGAAAGATTCTACGATCCCCTCAAAGGAATTGTCAAGCTTGATGGAAAAGATATAAGGACCTACCACCTCAGGGTCCTACGGAAACATATTGCACTAGTCAGCCAGGAGCCCATATTGTTCGCTGGCACCATAAGAGACAACATTGCCTATGGCGCATCATCAGATGAAATCAACGAATCAGAGATCATCGAGGCTGCAAGGGCAGCCAATGCTCACGATTTCATCGTTGCACTCAAGCATGGCTATGATACATGGTGTGCTAGTAAAGGGCTACAATTGTCTGGTGGGCAGAGGCAACGGATTGCTATAGCTCGGGCCATATTGAAAAACGCAGCAATATTGTTACTTGATGAAGCAACGAGCGCACTAGATAGCCAATCAGAGACAGTGGTGCAGGAAGCTTTAGAGCGTGTGACAATGGGACGGACGAGCGTGGTGGTGGCCCATAGGTTGAGTACCATTCAGAATTGTGATTTGATAGCCGTTGTGGATAAAGGAAACGTGGTGGAGAAGGGGACCCACACATCCTTGTTGGAAAAAGGCCCTACTGGGACCTACTACTCACTGGTGAACCGACAAAGGGGCCTGATATCACCAACATAG 3678 0.4918 MGRNIGSVRSIFMHADTADYCLMAFGLLGAICAGLYRPTLLFVVNKIMNNIGSASTSGDAFSHKINQNALILLYIACGSWVPFFLEGYCWSRTAERQATRMRSRYMKALLRQDVEYFDLHVTGTAEAISSVSEDSLVIQDVISEKVPNLLINAASFVGCYIVAFAMLWRLAIVGVPFVVLLVIPGFIYGRALMNLARKMKEEYSKAATIAEQAISSIRTVYSFVGERKTQSAFSAALQGPFKLGLRQGVAKGLAIGGNGVVLGIWAFMCWYGSRLVMYHGAQGGTVFATGAVMAIGGLSLGPGLSNLQYLSEACTAGERIMEVIKRVPKIDSDNMEGQTLENLCGEVEFKHVQFAYPSSPEITIFKDFSLKIPTGKKVALVGSSGSGKSTAVALLQRFYDPLGGEILLDGVAIDKLQLKWLRSQMGLVSQEPSLFATTIEENILFGKEDATMEEVVAAAEAAHAHHFICELPDGYDTQVGERGVQMSGGQKQRIAIARAVIKAPRILLLDEATSALDSESERVVQEALDSAALGRTTIIIAHRLSTIRNADIIAVVQDGHIVETGPHDQLIQNPAGLYTSLVRLQQADQPWKAVTSLTPATSLYLHTTSSNSTPPNSPLHSMPAGEEAATVTSGIPVPSFWRLLAMNYPEWKEASIGCLSAVLSGAIQPLYAFSMGSMISVYFLPDHEEMKKHTRIYSVCFFALFVLSLLSNICQHYSFAAMGENLTKRVREMMFSKILSFEVGWFDQDDNSTGAICFRLAKDATVVRSLVGDRMSLIVQTFSAVTISGTMGLIIAWRLAMVMIAIQPLMIISFYTRTVLLKSMSAKAIKAQEESGKLAAEAVSNLRTITAFSSQARILKMLEVAQEGPIQESIRQAWFSGIALGISQSLLSCSWALDFWYGGKLLSHGYISSKAFLQTFMILVSTSRVIADAGSMTNDLAKGIDAIRSVFAILDRLTQIQPENPDSYQPEKIRGHVQIQEVDFAYPARPNAFIFKGFSIDIDPGKSTALVGESGSGKSTIIGLIERFYDPLKGIVKLDGKDIRTYHLRVLRKHIALVSQEPILFAGTIRDNIAYGASSDEINESEIIEAARAANAHDFIVALKHGYDTWCASKGLQLSGGQRQRIAIARAILKNAAILLLDEATSALDSQSETVVQEALERVTMGRTSVVVAHRLSTIQNCDLIAVVDKGNVVEKGTHTSLLEKGPTGTYYSLVNRQRGLISPT* 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1334 1225 FunFam ABC transporter B family member 4 337 592 - -
Vvi19g1334 1225 Gene3D - 967 1221 IPR027417 -
Vvi19g1334 1225 CDD ABC_MTABC3_MDL1_MDL2 977 1218 - -
Vvi19g1334 1225 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 24 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g1334 1225 ProSitePatterns ABC transporters family signature. 1118 1132 IPR017871 GO:0005524|GO:0016887
Vvi19g1334 1225 SUPERFAMILY ABC transporter transmembrane region 642 956 IPR036640 GO:0005524|GO:0016020
Vvi19g1334 1225 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 347 583 IPR003439 GO:0005524
Vvi19g1334 1225 ProSitePatterns ABC transporters family signature. 486 500 IPR017871 GO:0005524|GO:0016887
Vvi19g1334 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 585 IPR027417 -
Vvi19g1334 1225 CDD ABC_6TM_Pgp_ABCB1_D2_like 644 960 - -
Vvi19g1334 1225 FunFam ABC transporter B family member 1 10 346 - -
Vvi19g1334 1225 CDD ABC_6TM_Pgp_ABCB1_D1_like 23 320 - -
Vvi19g1334 1225 SMART AAA_5 1004 1178 IPR003593 GO:0016887
Vvi19g1334 1225 SMART AAA_5 374 560 IPR003593 GO:0016887
Vvi19g1334 1225 FunFam Putative ABC transporter B family member 8 622 965 - -
Vvi19g1334 1225 Gene3D - 337 586 IPR027417 -
Vvi19g1334 1225 Pfam ABC transporter 366 514 IPR003439 GO:0005524
Vvi19g1334 1225 Pfam ABC transporter transmembrane region 656 926 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g1334 1225 Pfam ABC transporter transmembrane region 24 290 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g1334 1225 FunFam ABC transporter B family member 4 967 1222 - -
Vvi19g1334 1225 SUPERFAMILY ABC transporter transmembrane region 20 331 IPR036640 GO:0005524|GO:0016020
Vvi19g1334 1225 PANTHER ABC TRANSPORTER B FAMILY 6 712 IPR039421 -
Vvi19g1334 1225 Pfam ABC transporter 996 1146 IPR003439 GO:0005524
Vvi19g1334 1225 Gene3D ABC transporter type 1, transmembrane domain 11 908 IPR036640 GO:0005524|GO:0016020
Vvi19g1334 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 966 1218 IPR027417 -
Vvi19g1334 1225 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 656 942 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g1334 1225 CDD ABC_MTABC3_MDL1_MDL2 347 585 - -
Vvi19g1334 1225 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 977 1215 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1334 Vvi-Chr19 22379272 22383673 Dispersed/Proximal