Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1332 ATGCCCATTCGATCGTCCTTTTGGATGATTTGTCTGTCTTTAATTAAGAGCAAGGACAAGGAAGGCATTCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAACTGGAAGATGGTCGCACTCTTGCAGATTATAACATCCAAAAAGAGTCCACACTTCACCTTGTTTTGAGGCTCAGGGGAGGAACTATGATTAAGGTGAAAACTTTGACTGGAAAAGAAATCGAGATTGATATTGAACCAACCGATACCATTGATCGGATCAAGGAACGAGTTGAGGAGAAAGAAGGCATTCCGCCAGTGCAACAAAGGCTCATTTATGCTGGCAAACAACTCGGAGATGACAAAACTGCTCGTGACTACAACATTGAGGGAGGCTCTGTCCTGCATCTCGTCCTTGCACTGAGGGGTGGAGGCAGCGCCTGA 429 0.4569 MPIRSSFWMICLSLIKSKDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTARDYNIEGGSVLHLVLALRGGGSA* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1332 142 SUPERFAMILY Ubiquitin-like 19 63 IPR029071 -
Vvi19g1332 142 SMART ubq_7 64 135 IPR000626 GO:0005515
Vvi19g1332 142 SMART ubq_7 2 59 IPR000626 GO:0005515
Vvi19g1332 142 SUPERFAMILY Ubiquitin-like 65 140 IPR029071 -
Vvi19g1332 142 Gene3D - 15 65 - -
Vvi19g1332 142 Gene3D - 66 142 - -
Vvi19g1332 142 PRINTS Ubiquitin signature 40 61 IPR019956 -
Vvi19g1332 142 PRINTS Ubiquitin signature 19 39 IPR019956 -
Vvi19g1332 142 FunFam NEDD8 protein 64 141 - -
Vvi19g1332 142 PANTHER UBIQUITIN 16 65 - -
Vvi19g1332 142 ProSiteProfiles Ubiquitin domain profile. 64 139 IPR000626 GO:0005515
Vvi19g1332 142 ProSiteProfiles Ubiquitin domain profile. 15 63 IPR000626 GO:0005515
Vvi19g1332 142 Pfam Ubiquitin family 18 61 IPR000626 GO:0005515
Vvi19g1332 142 Pfam Ubiquitin family 66 137 IPR000626 GO:0005515
Vvi19g1332 142 ProSitePatterns Ubiquitin domain signature. 90 115 IPR019954 -
Vvi19g1332 142 CDD Ubl_NEDD8 66 139 IPR038738 -
Vvi19g1332 142 FunFam Polyubiquitin-C 15 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1332 Vvi-Chr19 22341690 22349741 Dispersed/Transposed