Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1316 ATGAGCTGCATGCATGTTTTTCCCAACAGTTCAGTTTCTCAAGCAAACACTGTTCATCGGGTGTTCAAGCTAGAGGGAGGACGAACATTAGTTCAGGTCAATGGTCAGAGAGCCGTCTCTGCATGCCTTAATGTGGAGGTTAAAGCGCCAAAGTCTGCAAATTTAGGGAAATTAGGGTTTGGGGAGAGCAAGGATGTCATGGAGATGGAAGGGAGAGTTATTGTGGGAACATATGCAAGAACTCCAATTGTACTTGTGAGCGGAAAAGGATGCAAATTGTATGATGCTGAAGGACGAGAGTATTTGGATATGAGTTCAGGGATTGCAGTGAATTCACTTGGACATGGTGACCCAACTTGGTTGAAAGCCGTCATTGAACAGGCAAACACGCTGACCCACGTCAGCAATATCTACTACTCAATCCCTCAGGTGGAGCTTGCCAAGCGTCTAGTGGCTTGTTCTTTTTCTGATCGTGTGTTTTTCTCAAATTCTGGAACAGAAGCAAATGAAGCTGCCATAAAATTTGCAAGGAAGTTTCAGCGGCACTCACATCCGGATGCAAAGGAGCCTCCCACGGATTTCATAGCTTTTACAAATAGCTTCCATGGGAGGACCATGGGTGCTCTTGCTCTGACCAGCAAGGAGCATTATCGATCACCTTTTGAACCTGTTATGCCTGGAGTCACTTTTGTAGAGTATGGAAATATAGAAGCTACAAAAGAGCTGATTCAGAAAGGCAAAACCGCAGCAGTGTTTGTGGAACCCATCCAGGGAGAAGGGGGTATATACAGTGCAACAAAGGAATTTTTACAATTTCTGCGAAGTGCTTGTGATGATGCTGGGGTTCTCCTTGTTTTCGATGAGGTTCAATGTGGTCTAGGCCGAACTGGGCACCTCTGGGCTCATGAGTCCTATGGTGTATTCCCTGACATAATGACACTAGCCAAGCCTCTTGCTGGAGGCCTACCTATCGGTGCTGTACTGGTCACCGAACGAGTTGCTTCTGCCATAAACTTTGGTGACCATGGAAGCACTTTTGCTGGCAGCCCCCTTGTCTGCAACGCTGCTCTTGCTGTCCTTGAAAAAATCTCAGAACCCAGCTTCTTGGCCAGCGTCGCCAAGAAGGGCCAATACCTGAAGCAAATTTTAACCCAGAAGTTGGGACATAACCCACATGTGAAAGAAGTACGTGGGTTTGGGCTCATTGTTGGGATTGAGCTTGACGTCCAGGCCTCGCCGCTGGTGGTTGCCTGTCAAGAAGCTGGCCTTCTGGTGCTCACCTCTGGAAAGGGGAATGTTGTGAGGCTGGTGCCTCCATTGATCATAACAGAAGAGGAGTTGGAGTTGGCAGCTGAGGTTCTTTCCGGGTCTCTTCCAGCACTTGATGGGAGCAATTCAAAGTAG 1404 0.4779 MSCMHVFPNSSVSQANTVHRVFKLEGGRTLVQVNGQRAVSACLNVEVKAPKSANLGKLGFGESKDVMEMEGRVIVGTYARTPIVLVSGKGCKLYDAEGREYLDMSSGIAVNSLGHGDPTWLKAVIEQANTLTHVSNIYYSIPQVELAKRLVACSFSDRVFFSNSGTEANEAAIKFARKFQRHSHPDAKEPPTDFIAFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVTFVEYGNIEATKELIQKGKTAAVFVEPIQGEGGIYSATKEFLQFLRSACDDAGVLLVFDEVQCGLGRTGHLWAHESYGVFPDIMTLAKPLAGGLPIGAVLVTERVASAINFGDHGSTFAGSPLVCNAALAVLEKISEPSFLASVAKKGQYLKQILTQKLGHNPHVKEVRGFGLIVGIELDVQASPLVVACQEAGLLVLTSGKGNVVRLVPPLIITEEELELAAEVLSGSLPALDGSNSK* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1316 467 Gene3D - 117 366 IPR015421 GO:0003824
Vvi19g1316 467 PIRSF Transaminase_4ab_Lys_Orn 28 223 IPR005814 GO:0008483|GO:0030170
Vvi19g1316 467 PIRSF Transaminase_4ab_Lys_Orn 216 461 IPR005814 GO:0008483|GO:0030170
Vvi19g1316 467 Hamap Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 73 461 IPR004636 GO:0006525|GO:0008483
Vvi19g1316 467 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 284 321 IPR005814 GO:0008483|GO:0030170
Vvi19g1316 467 CDD OAT_like 67 443 IPR005814 GO:0008483|GO:0030170
Vvi19g1316 467 Gene3D Aspartate Aminotransferase, domain 1 82 448 IPR015422 GO:0003824
Vvi19g1316 467 FunFam Acetylornithine aminotransferase, mitochondrial 139 366 - -
Vvi19g1316 467 Pfam Aminotransferase class-III 81 455 IPR005814 GO:0008483|GO:0030170
Vvi19g1316 467 SUPERFAMILY PLP-dependent transferases 75 458 IPR015424 -
Vvi19g1316 467 PANTHER AMINOTRANSFERASE CLASS III 62 461 - -
Vvi19g1316 467 NCBIfam acetylornithine/succinylornithine family transaminase 74 455 IPR004636 GO:0006525|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1316 Vvi-Chr19 22076312 22081267 Dispersed/Proximal