Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1302 ATGTCAGTGTTGATAGTGACGAGTTTGGGGGACATAGTGGTGGATTTGTACACAGATCGCTGTCCTCTCACCTCCAAGAACTTCTTAAAGCTCTGCAAGATCAAATATTACAATGGTTGTCTGTTTCACATGGTTCAGAAGGATTTTACGGCACAGACTGGTGACCCGACTGCAACGGGGACTGGTGGTGATTCTATCTACAAATTTCTATATGGTGATCAAGCTCGCTTTTTCAATGATGAGGTCCATCTGGATTTAAAGCATTCAAAAACAGGAACTGTTGCCATGGCTAGTGCAGGAGAGAATCTTAATGCTTCTCAGTTCTATTTCACGCTGCGTGATGATCTAGACTACCTGGATGGAAAGCATACTGTTTTTGGTGAGGTTGCAGAAGGGCTTGAGACACTAACGAGGATAAATGAAGCTTATGTGGATGATAAAGGGAGACCATATAAAAATATCCGAATCAAACACACTTATATATTGGATGATCCTTTTGGTGATCCTTCCCAGCTCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAATTAGATACATCGGAGCTTGAGGAGCTTATCCGTTCAAAAGAGGCACATTCTCGTGCAGTTGTACTTGAGAGTATTGGGGACATTCCTGATGCTGAGATAAAGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATCGGCGGAAATTATCCGTGATTTCAAGACTGGAGACAGTTTATGCTATGCTTTCATTGAATTTGAGACCAATGAGGCATGTGAACAAGCATATTTTAAGATGGATAATGCGTTAATTGATGACCGGAGAATACATGTGGATTTCAGTCAAAGTGTTTCAAAACTGTGGTCCCAATACAGGCGCAGAGATCACCAAACGGGCAAAGGAACAGGTTGCTTCAAATGTGGTGCAGTCGACCACATTGCCAAGGATTGTACTGGGAGCCCCACCAAGCAACAACAACCTCCAAAATACATCTTAAAAGACAACAACACTCAGCATGGTGGAGATAATAACTCTAGGTATGAAATGGTTTTTGATGAAGACACCTCAGAAAGTCCAAAACGAGAAAAGAGACGCCAGGACCATGGACCTGAAGATCAAATTGAGAAAGAAAAACTGAACAGGCGAGGTTCAGAAGACTGGAAACGTAGGGACCATGACAAGAAAGACTCTGATGATAGGCATAGGCAGAGTGACAAGGGCCAAGAAAGTAGAGCAAGTCGCTTGAGTGGGAGCAGAAGAGACCCATATCATCATGAAGAGAGAATTGACAGAGAAAAACATAGAGAGAGGCAAGACGAAGGAAAAAGAGAGAGAGATGAGCGGGACTATAGAAAGAGAAATGCAGATAGTGATAGCCATAGAGAGAGGAGGGACGGGAGAGACGAACGGCACCACAGAAAGAGAAATGCAGATGGTGATAGGCATGTAGATAGAAGGGATGTTGGGGATTATAGAAAGAGAGATACAGATGATGATGACCATGGAGATGGAAGGGATGGCAGAGATTACAGAAAGAGAAGCGCTGACAATGATGGGCGTGGGGATAGGAGGGATGACAGAGATCACAGAAAGACAAAAGCTGATGAAGACAGAAGGGACAAGAGGGACATGAGGGACGAGCCAAGCTACAGAAAGAGAAGTGCTGATGGTGATGGCAATGGAGGAAGGAGGGAAGAGCGAGGTCATAAAAGGCATAGCACGGAAAGCAATGATGATCGTGATAGAAGGCACCGAGGTGACCGGAGGTGA 1884 0.4416 MSVLIVTSLGDIVVDLYTDRCPLTSKNFLKLCKIKYYNGCLFHMVQKDFTAQTGDPTATGTGGDSIYKFLYGDQARFFNDEVHLDLKHSKTGTVAMASAGENLNASQFYFTLRDDLDYLDGKHTVFGEVAEGLETLTRINEAYVDDKGRPYKNIRIKHTYILDDPFGDPSQLTELIPDASPEGKPKDEVDDDVRLEDDWVPLDEQLDTSELEELIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVISAEIIRDFKTGDSLCYAFIEFETNEACEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYRRRDHQTGKGTGCFKCGAVDHIAKDCTGSPTKQQQPPKYILKDNNTQHGGDNNSRYEMVFDEDTSESPKREKRRQDHGPEDQIEKEKLNRRGSEDWKRRDHDKKDSDDRHRQSDKGQESRASRLSGSRRDPYHHEERIDREKHRERQDEGKRERDERDYRKRNADSDSHRERRDGRDERHHRKRNADGDRHVDRRDVGDYRKRDTDDDDHGDGRDGRDYRKRSADNDGRGDRRDDRDHRKTKADEDRRDKRDMRDEPSYRKRSADGDGNGGRREERGHKRHSTESNDDRDRRHRGDRR* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1302 627 SMART rrm1_1 244 317 IPR000504 GO:0003723
Vvi19g1302 627 SUPERFAMILY Retrovirus zinc finger-like domains 327 363 IPR036875 GO:0003676|GO:0008270
Vvi19g1302 627 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Vvi19g1302 627 SMART c2hcfinal6 341 357 IPR001878 GO:0003676|GO:0008270
Vvi19g1302 627 SUPERFAMILY RNA-binding domain, RBD 229 338 IPR035979 GO:0003676
Vvi19g1302 627 ProSiteProfiles Zinc finger CCHC-type profile. 342 355 IPR001878 GO:0003676|GO:0008270
Vvi19g1302 627 MobiDBLite consensus disorder prediction 384 627 - -
Vvi19g1302 627 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Vvi19g1302 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Vvi19g1302 627 CDD cyclophilin_RRM 4 169 IPR035538 -
Vvi19g1302 627 MobiDBLite consensus disorder prediction 356 382 - -
Vvi19g1302 627 Gene3D - 235 344 IPR012677 -
Vvi19g1302 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Vvi19g1302 627 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Vvi19g1302 627 Gene3D - 1 173 IPR029000 -
Vvi19g1302 627 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Vvi19g1302 627 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Vvi19g1302 627 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Vvi19g1302 627 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Vvi19g1302 627 Pfam Zinc knuckle 341 356 IPR001878 GO:0003676|GO:0008270
Vvi19g1302 627 CDD RRM_PPIL4 240 322 - -
Vvi19g1302 627 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 520 IPR035542 -
Vvi19g1302 627 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Vvi19g1302 627 MobiDBLite consensus disorder prediction 356 627 - -
Vvi19g1302 627 FunFam Peptidyl-prolyl cis-trans isomerase 182 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1302 Vvi-Chr19 21921001 21933586 Dispersed