Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1299 ATGGATTGTGTGACCCCAATCATGGATGTCGCCACTCGCTTGTGGAGTTGCGCTTCCAAGCACTCTTCCTACGTCATTGATCTGCAAGAAAATCTATGCTCTTTGAGAAACGAAATGGAGGAACTAAAGAATGTAGGTGAAGATGTCAAGAGAAGGGTCGAAGATGCAGAGAAACGCCAGATGAAGCGGAGAAATGAAGTGAATGGCTGGCTTAATAGTTTAACAGCTCTGGAGAGAGAAGTGAACGAAATTCTGGAAAAAGGTGATCAAGAAATTCAGAAGAAATGCCTCAGGAATTGCTGTACCAGGAACTGTCGGTTCAGCTACAAGATTGGGAAGATGGCAAGGGAAAAAATCCCAGCTGTCTCTGAGCTAAAGAACAAAGGACACTTTGATGTCGTGGCAGATATATTGCCTTCAGCTCCGGTGGATGAGAAGCCTATGGAGAAGTCTGTCGGCTTAAATTTGATGTTTGGCGAGATATGGAGATGGCTGGAAGATGAAAAGGTGGGAATTATCGGATTGTATGGAATGGGGGGTGTGGGGAAAACTACCCTCATGAAGAAGATCAACAACGAGTTCCTCAAAACAAAGCTTGGATTTGATGTAGTGATCTGGGTTGTTGTGTCGAAACCGGCTAAAGCTGAGAAGGTTCAGGAAGTCATCCTGAACAGACTAGAGGTTCCTCGTTACGAATGGGAAAATAGAAGCAGAGATGAGAAAGGACAGAAAATATTCAACATCTTGAAAACAAAAAAGTTTGTACTACTGTTAGATGATGTATGGGAGCGTCTTGATCTCACTGAAGTGGGGGTTCCTCATCCCAATGGTGAAGATAACATGTCCAAATTGATATTTACAACCAGATCAGAAGATGTGTGCCATGTGATGGAAGCTCATAAGCATGTCAAGGTAGAGTGTTTGGCATCAGATGAAGCCCTTGCTTTGTTTCGGCTGAAGGTGGGGGAGGATACTTTTAATTCTCATCCACAGATACCAGCACTTGCCAAAGAAATCGTGAAAGAGTGCAAAGGTCTGCCGCTTGCGCTCATCACCATCGGCCGAGCAATGGTTGACAAGAAGACTCCCCAGAGGTGGGATCGAGCAGTACAAGTATTAAGGACTTATCCATCAACATTTGCAGGTATGGAGGATAAAGTGTTTCCCATTCTAGCATTCAGTTACGATAGCTTATACAATGATACCATCAAATCCTGCTTTCGATATTGTTCTATGTTCCCATCCGATTATGAAATTTTGGAAGATGAACTTATAGAACTTTGGATTGGGGAGGGGTTTTTGATTGAATCTTATGACATCCAAAGAGCACGGAACGAAGGATATGATGCTATCGAAAGCCTAAAGGTGGCATGTTTGTTGGAGAGTGGTGAATCTGAAAAACATGTTAAGATGCATGATATGATCCGCGACATGGCTTTATGGTTAACTACGAAAACTGGGGAGAATAAGAAGAAGGTTGTGGTAAAAGAACGAGCTAGAGCACATGGATTCCAAAAGTGGATCTCTTTCCCTAATCTTGAGACTTTGTTTGTGAGAAGAAGCCTCCTGGAAGAAATTCCACCTGGGTTCTTCCAAAAAATGCATTTGGTACGAGTTCTTGACTTGTCATATAATTATCGCCTGGACAGGTGTTGGCAGGTTAATCAATTAGCTAACCTGGAATATCTTAACATGTCATTTACAAATATATGCGCACTGTGGGGTATTGTTCAAGGATTGAAAAAATTAAGGTATTTGATACTGAATTTTACGCCTGTCAAAGAAATCACTCCAGGATTGATATCGGATCTTTCATCCTTGCAATTGTTCAGCATGCATGGTGGCAGCCACAATTCAGACGAGATTCGCCTCTTTGATCGGATTTGTGAAGACAATATTCTCTGTGGTGGTAAAAAAGCTTTATTGCAGGAGTTGGAAAGCTTGGAGTACATAAATGAAATCTCTATCATTCTGCATAGCGATGTCTCTGTCAAAAAATTATTGAGCTCCTATAAGTTGCAGAGCTGCATAAGAAAGCTACACCTTCAATGCTGCAGCAAAATGACCTCACTCGAACTATTGCCTGCGTGTGTGCAAACAATGGTGCATCTGGAGACGCTTCAGATAAGTAGTTGTAACGATCTGAAAGACGTGAAAATTAATGAGAAAGACAAAGGGAAGCGAGAATTCATATCAAGATATAGTAGGGTTCTTTCAGAGTTCTGCATGCTTCATGAAGTACACATTATTTCTTGCTCCAAATTGCTCAACTTGACATGGCTTATTCATGCTCCATGTCTTCAATTGCTTGCTGTCAGCGCTTGTGAATCAATGGAAGAAGTGATCGGTGACGATGATGGAGGCGGTAGAGCTTCAGTCGGAGAAGAGAATTCAGGGTTATTCTCAAGACTCACAACTCTACAATTGGAGGGTCTGCCAAAGCTGAAGAGCATCTGCAACTGGGTCTTGCCTCTTCCTTCCCTGACAATGATTTATGTTCACTCCTGTGAAAGCCTGAGGAAGCTCCCATTTGATTCCAACACTGGAAAGAACAGTTTAAAGAAAATCCAAGCAGAACAAAGTTGGTGGGAAGGGTTGCAGTGGGAGGATGAAGCCATTAAGCAGAGTTTCAGTCCATTTTTCATGCCTTTAGAATATATGGATCTCTATCAGGTCTTAGGATATGGTTATTGA 2694 0.4217 MDCVTPIMDVATRLWSCASKHSSYVIDLQENLCSLRNEMEELKNVGEDVKRRVEDAEKRQMKRRNEVNGWLNSLTALEREVNEILEKGDQEIQKKCLRNCCTRNCRFSYKIGKMAREKIPAVSELKNKGHFDVVADILPSAPVDEKPMEKSVGLNLMFGEIWRWLEDEKVGIIGLYGMGGVGKTTLMKKINNEFLKTKLGFDVVIWVVVSKPAKAEKVQEVILNRLEVPRYEWENRSRDEKGQKIFNILKTKKFVLLLDDVWERLDLTEVGVPHPNGEDNMSKLIFTTRSEDVCHVMEAHKHVKVECLASDEALALFRLKVGEDTFNSHPQIPALAKEIVKECKGLPLALITIGRAMVDKKTPQRWDRAVQVLRTYPSTFAGMEDKVFPILAFSYDSLYNDTIKSCFRYCSMFPSDYEILEDELIELWIGEGFLIESYDIQRARNEGYDAIESLKVACLLESGESEKHVKMHDMIRDMALWLTTKTGENKKKVVVKERARAHGFQKWISFPNLETLFVRRSLLEEIPPGFFQKMHLVRVLDLSYNYRLDRCWQVNQLANLEYLNMSFTNICALWGIVQGLKKLRYLILNFTPVKEITPGLISDLSSLQLFSMHGGSHNSDEIRLFDRICEDNILCGGKKALLQELESLEYINEISIILHSDVSVKKLLSSYKLQSCIRKLHLQCCSKMTSLELLPACVQTMVHLETLQISSCNDLKDVKINEKDKGKREFISRYSRVLSEFCMLHEVHIISCSKLLNLTWLIHAPCLQLLAVSACESMEEVIGDDDGGGRASVGEENSGLFSRLTTLQLEGLPKLKSICNWVLPLPSLTMIYVHSCESLRKLPFDSNTGKNSLKKIQAEQSWWEGLQWEDEAIKQSFSPFFMPLEYMDLYQVLGYGY* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1299 897 Gene3D - 395 480 IPR036388 -
Vvi19g1299 897 FunFam Probable disease resistance protein At1g63360 395 481 - -
Vvi19g1299 897 SMART AAA_5 169 327 IPR003593 GO:0016887
Vvi19g1299 897 FunFam Probable disease resistance protein At5g66910 307 394 - -
Vvi19g1299 897 SUPERFAMILY L domain-like 461 860 - -
Vvi19g1299 897 PRINTS Disease resistance protein signature 343 357 - -
Vvi19g1299 897 PRINTS Disease resistance protein signature 699 715 - -
Vvi19g1299 897 PRINTS Disease resistance protein signature 172 187 - -
Vvi19g1299 897 PRINTS Disease resistance protein signature 248 262 - -
Vvi19g1299 897 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 34 843 - -
Vvi19g1299 897 Pfam Leucine rich repeat 511 570 IPR001611 GO:0005515
Vvi19g1299 897 Gene3D - 132 307 IPR027417 -
Vvi19g1299 897 FunFam Probable disease resistance protein At1g61300 135 302 - -
Vvi19g1299 897 Coils Coil 39 59 - -
Vvi19g1299 897 Coils Coil 74 94 - -
Vvi19g1299 897 Pfam NB-ARC domain 157 396 IPR002182 GO:0043531
Vvi19g1299 897 Gene3D Ribonuclease Inhibitor 500 724 IPR032675 -
Vvi19g1299 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 410 IPR027417 -
Vvi19g1299 897 Gene3D Ribonuclease Inhibitor 732 861 IPR032675 -
Vvi19g1299 897 Gene3D - 308 394 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1299 Vvi-Chr19 21897813 21900598 Proximal