Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1297 ATGGATTGTGTGACTCCAATCTTGGATGTTGCCACTCGCTTATGGACTTGCACTGCCAAGCGTATTGTTTACATCCGCCGTCTCCCCCGAAATCTCAAAATCTTGAGAACTGCAATGGAGGAACTCGGGAGCGTTTATGAAGATGTGATTGAAAGGGTGGAAAGTGAAGAGAAACTTCAGAAGAAGCGTACTCGTGCAGTGGAAGGCTGGATCCGCAGTGTAGAAGCCATGGAAAAAGAAATTAAGGAAATATTGGAAGAAGGTGATGAAGAAGTCCAGAATAAATGTCTCGGAACCTGTTGTCCCAGAGACTCTTACGCCAGTTACAAGCTTGGGAAGAGGGTATCTAGAAAGATTCGGGCTGTGGCTGCACTACGAAGCAAAGCAAATCATTTCCACGAGGTAGCTGTCCCTTTGCCTAGTCCTCCGGTGATTGAGAGGCCTTCGGAAAAGACAGTAGGCTTAGATTCACCTTTTCTTGAGGTCTGGAGATGGCTCCAAGATGAACAAGTCAGAACCATTGGAATATACGGAATGGGGGGTGTGGGGAAAACTGCTCTCTTGAAGAAAATCAACAACAAGTTCCTTCAACCTAGCCATGATTTTGATGTTGTGATCTGGGTTGTCGTCTCCAAACCAACAAACTTGCAAAGGGTCCATGAAACACTTCGGAACAAATTGGAGATTCCAGATGGTAGATGGAAAAATAGGAGCGAGGATGAAAAGGCTGCAGAAATATTCGCTGTCCTGAAAACCAAGAAATTTGTGCTCTTGTTAGATGATATATGGGAGCCCCTTGATCTCTTGAAAGTGGGAATTCCCCTTTCGACTGTTGGGAATAAGTCCAAAATAGTATTCACAACAAGATCTGCAGATGTGTGTCGTGATATGGAAGCTCAGAATAGCATTAAAGTGGAGTGCTTGGCTTGGGAGGAAGCCCTTACTTTGTTTTGGGCCAAGGTAGGAGAAGACGCTTTAAATTCTCATCCAGATATACCAAAGCTATCGGAAATTGTTGTCGGGGAGTGCAAAGGCCTGCCGCTTGCTCTCATTATCATCGGTCGGGCAATGGCAGGGGCAAGAACACCTGAAGACTGGGAGAAAAAAATAAAAATGTTGAAGAATTATCCGGCAAAGTTTCCAGGTATGGGGGATAGTTTGTTTCCAGTTTTGGCATTCAGTTACGATAGCCTACCTGATGAAGCTGTCAAATCTTGTTTCCTGTATTGCTCTTTATTTCCGGAGGATTATGAAATTTCTCCTCAACATCTTATCGAACTTTGGCTCGGGGAGGGGTTTCTGGATGAATATGACGGCATACGAGAAGCAAGAAATCAAGGAGAAGAAATTATCGAAAGGTTAAAGGACGTGTGTCTATTGGAAAATGGCAGATCCCAAAAACAAGAATATTTGAAGATGCATGATGTTATTCGCGATATGGCGCTATGGTTAGCATCTGAGAATGGGAAGAAGAAGAACAAATTTGTGGTAAAAGACCAAGTTGGATTGATTAGAGCACATGAAGTTGAGAAATGGAATGAGACACAGAGGATATCATTATGGGAAAGTAGAATTGAAGAACTTAGGGAACCGCCATGTTTCCCCAATATTGAGACCTTCTCTGCATCAGGTAAGTGCATCAAGTCGTTTCCAAGTGGTTTCTTTGCATACATGCCTATCATAAGAGTTTTGGACTTGTCAAACAATTATGAACTTATTGAATTACCTGTGGAGATCGGCAACTTAGTTAATTTGCAATACCTTAATTTGTCAAGAACAAGTATAGAAAACATACCAGTGGAGCTCAAAAATTTGAAAAATCTCAAGTACTTGATATTGGATAATATGAATTCACTTCAACCACTCCCATCACAAATGCTATCAGTCCTTTCCTCTCTGCAATTGTTCAGTATGTTCAACTCACCCTATAAGGGAGATCATAGAACCCTTTTAGAGGATTTAGAGCAGTTGGAATACATCAATGATATATCCATTGACCTTACAACTGTCTTCTCCGCCCAAGCCTTATTCAACTCCCACAAGTTGCAAAGCTCCACAAGACGGCTACGATTATTTAACTGCAAGAATCTGAACTTGGTCCAACTATCCCCTTACATAGAGATGCTTCATATATCCTTCTGTCACGCATTTAAAGATGTGCAAATCAGTTTGGAAAAGGAGGTGCTGCATTCAAAATTCCCAAGGCACGGGCATTGCTTGTACCACCTTTGCCATGTAAATATATCTTGGTGTAGTAAATTGTTGAACTTGACCTGGCTTATTTATGCTCCAAACCTTAAGTTTCTATCGATTGATGACTGTGGGTCATTGGAAGAAGTGGTTGAAATCGAAAAGAGCGAAGTTTCAGAACTTGAACTGAATTTCGACCTTTTTTCAAGACTGGTATCTCTCACTTTGATTAATCTACCAAAACTAAGGAGTATATGTAGATGGCGGCAGTCCTTTCCTTCCTTGAGAGAAATCACTGTGCTTGGGTGTCCAAGAATAAGGAAGCTGCCATTTGATTCCGACACCGGAACTAGTAAGAATTTAGAGAAAATCATTGGAGAACAAGAATGGTGGGATGGCTTGGAGTGGGAGGACAAAACCATTATGCACAGTCTCACTCCATATTTTCGAACAACGCAAAGCTCAAAAAGACTAGAGTTCCCATTCATCCCATTACAGGACAGGCATATTTCAAGATTCCCAAGATGTATTTCAAGATTCTTACAAGCTCCTTTTGGCCACATGGATGTTTGA 2763 0.4177 MDCVTPILDVATRLWTCTAKRIVYIRRLPRNLKILRTAMEELGSVYEDVIERVESEEKLQKKRTRAVEGWIRSVEAMEKEIKEILEEGDEEVQNKCLGTCCPRDSYASYKLGKRVSRKIRAVAALRSKANHFHEVAVPLPSPPVIERPSEKTVGLDSPFLEVWRWLQDEQVRTIGIYGMGGVGKTALLKKINNKFLQPSHDFDVVIWVVVSKPTNLQRVHETLRNKLEIPDGRWKNRSEDEKAAEIFAVLKTKKFVLLLDDIWEPLDLLKVGIPLSTVGNKSKIVFTTRSADVCRDMEAQNSIKVECLAWEEALTLFWAKVGEDALNSHPDIPKLSEIVVGECKGLPLALIIIGRAMAGARTPEDWEKKIKMLKNYPAKFPGMGDSLFPVLAFSYDSLPDEAVKSCFLYCSLFPEDYEISPQHLIELWLGEGFLDEYDGIREARNQGEEIIERLKDVCLLENGRSQKQEYLKMHDVIRDMALWLASENGKKKNKFVVKDQVGLIRAHEVEKWNETQRISLWESRIEELREPPCFPNIETFSASGKCIKSFPSGFFAYMPIIRVLDLSNNYELIELPVEIGNLVNLQYLNLSRTSIENIPVELKNLKNLKYLILDNMNSLQPLPSQMLSVLSSLQLFSMFNSPYKGDHRTLLEDLEQLEYINDISIDLTTVFSAQALFNSHKLQSSTRRLRLFNCKNLNLVQLSPYIEMLHISFCHAFKDVQISLEKEVLHSKFPRHGHCLYHLCHVNISWCSKLLNLTWLIYAPNLKFLSIDDCGSLEEVVEIEKSEVSELELNFDLFSRLVSLTLINLPKLRSICRWRQSFPSLREITVLGCPRIRKLPFDSDTGTSKNLEKIIGEQEWWDGLEWEDKTIMHSLTPYFRTTQSSKRLEFPFIPLQDRHISRFPRCISRFLQAPFGHMDV* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1297 920 FunFam Probable disease resistance protein At1g61300 138 302 - -
Vvi19g1297 920 Gene3D - 395 482 IPR036388 -
Vvi19g1297 920 Gene3D Ribonuclease Inhibitor 732 854 IPR032675 -
Vvi19g1297 920 Gene3D - 134 307 IPR027417 -
Vvi19g1297 920 PRINTS Disease resistance protein signature 603 619 - -
Vvi19g1297 920 PRINTS Disease resistance protein signature 249 263 - -
Vvi19g1297 920 PRINTS Disease resistance protein signature 343 357 - -
Vvi19g1297 920 PRINTS Disease resistance protein signature 173 188 - -
Vvi19g1297 920 SUPERFAMILY L domain-like 468 855 - -
Vvi19g1297 920 Gene3D - 308 394 IPR042197 -
Vvi19g1297 920 Coils Coil 67 94 - -
Vvi19g1297 920 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 34 840 - -
Vvi19g1297 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 410 IPR027417 -
Vvi19g1297 920 Pfam NB-ARC domain 161 396 IPR002182 GO:0043531
Vvi19g1297 920 Gene3D Ribonuclease Inhibitor 509 731 IPR032675 -
Vvi19g1297 920 ProSiteProfiles Leucine-rich repeat profile. 584 606 IPR001611 GO:0005515
Vvi19g1297 920 FunFam Probable disease resistance protein At1g63360 395 483 - -
Vvi19g1297 920 FunFam Probable disease resistance protein At5g66910 307 394 - -
Vvi19g1297 920 Pfam Leucine rich repeat 547 595 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1297 Vvi-Chr19 21872655 21876155 Dispersed/Tandem