Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1290 ATGGATTTTGTGAGCCCAGTCTTGGATATTGCCTCTCGCTTGTGGGATTGTACTGCCATGCGTGCTGTTTACATTCGTGAGCTCCCAGAAAATCTCAACTCTCTAAGAACTGCAATGGAGGACCTCAAGAACGTCTATGAAGATGTGAAGGAAAAGGTGGACCGTGAAGAGAAACTTCAGAAGAAACGTACTCATGGAGTGGATGGCTGGATCCAGAGTGTAGAAGCCATGGAAAAAGAAGTGAATGATTTATTGGCAAAAGGTGATGAAGAAATCCAGAAGGAATGTCTCGGAACATGTTGTCCCAAAAACTGCCGTGCCAGCTACAAGATTGTGAAGATGGTACGTGGAAAGATGGATGATGTGGCTTTAAAGAAGACGGAGGGCTTAAATTTCAGTGTGGTGGCTGAACCTCTGCCCAGTCCTCCCGTGATCGAGAGGCCTTTGGACAAGACGGTGGGCTTAGATTCATTGTTTGACCACGTTTGTATGCAACTCCAGGATGACAAAGTAGGAAGTGTCGGTTTATATGGCATGGGGGGTGTGGGCAAAACCACCCTCTTGACCAGGATCAACAATGAGTTCCTCAAAACAAGGGTTGTGTTTGATGCAGTGATTTGGGTGACTGCGTCCAGACAAGCCAATGTGGAAAAGGTCCAGCAAGTTCTTTTCAATAAATTGGAGATTCCCAAAGATAAATGGGAAGGTAGTAGTGAGGATGAAAGGAAAGAAGCAATATTCAATGTCTTGAAGACGAAGAAATTTGTCCTCCTATTGGATGATATATGGGAGCCTCTTGATCTCTTTGCAGTGGGGATTCCTCCTGTAAATGATGGAAGCACGTCCAAGGTGGTATTTACTACCCGATTTTCAACTGTGTGCCATGATATGGGAGCTAAGAAGGGCATTAAAGTGAAGTGCTTAGCATGGGAGGAAGCATTTGCTCTGTTTCAGACATATGTAGGAGAAGACACTATAAATTCTCATCCCCATATACCAAAGTTGGCGGAGATTGTTGTCAAAGAGTGTGACGGCCTCCCACTTGCCCTCATCACCATAGGACGAGCAATGGCAGGAGCAAAAACACCTGAGGAATGGGAGAAAAAAATACAAATGTTGAAGAATCATCCAGCAAAGTTTCCAGGTATGGAGAATCATTTGTTTTCATGCTTGTCATTCAGTTATGATAGCCTACAGGACGAAGCAGTCAAATCATGTTTCCTGTATTGCTCTTTATTTCCGGAGGACTATGAAATCAATTGTAATGACCTTGTACAACTATGGATCGGAGAGGGTTTGTTAGATGAATACGGTGACATAAAAGAAGCAAAAAATAGAGGAGAAGAAATTATTGCCAGTTTAAAGCATGCATGCCTATTGGAGAGTGTTGGTAGGGAAGATAGATGGTCCCCAGCAACATACGTGAAGATGCATGATGTCATCCGTGATATGACTTTGTGGTTAGCTCGTCAAAATGAGAGTAAGAAGCAAAACAAATTTGTGGTTATAGATAAAGGCGAATTGGTTAAGGCCCATGAAGTTGAAAAATGGAAGGAGATGAAAAGGATATCATTATTTTGTGGTAGTTTTGATGAATTCATGGAACCACCATCTTTTCCTAATCTTCAGACTTTGCTGTTTCTATGGATTGACAACTGTGGCTCTTTGGAAGAAGTGATAGAAGTTGACCAGTGTGATGTTTCAAAAATTGAATCCGACTTCGGCCTATTTTCAAGACTTGTTCTTCTCTATTTGTTGGGTCTACCAAACCGGCCAGTCTTGGATATTGCCTCTTGCTTGTTGGATTGTACTGCCAAGCGTGCTGTTTACATCCGTGAGCTCCCAGGAAACCTCAACTCTCTAAGAACTGCAATGGACGACCTCAAGAAAGTCTATGAAGATGTGAAGGAAAAGGGTTGGGTTGACGCAGTGATTTGGGTGACTCTGTCCAGACCAGCAAATGTGGAGAAGGTTCAGCAAGTTCTTTTCAATAAATTGGAGATTCCTAGTAACAACTGGGAAGGTAGAAGTGAGAATGAAAGGAAAGAAGCAATATTCAATGTCTTGAAGATGAAGAAAATTGCCGTCTTATTAGATGATATATGGGAGCCTCTTGATCTCTTTGCAGTGGGGATTCCTCCTGTAATTGATGGAAATAAGTCCAAGGTGGTATTTACAACCCAATTTTCAACTGTGTGCCAAGATATGGGAGCCAAGGGCGTTGAAGTGAAGTGCTTAGCATGGGAGGAAGCATTTGCTCTGTTTCAGACATATGTAGGAGAAGACAATATATTCTGA 2298 0.4256 MDFVSPVLDIASRLWDCTAMRAVYIRELPENLNSLRTAMEDLKNVYEDVKEKVDREEKLQKKRTHGVDGWIQSVEAMEKEVNDLLAKGDEEIQKECLGTCCPKNCRASYKIVKMVRGKMDDVALKKTEGLNFSVVAEPLPSPPVIERPLDKTVGLDSLFDHVCMQLQDDKVGSVGLYGMGGVGKTTLLTRINNEFLKTRVVFDAVIWVTASRQANVEKVQQVLFNKLEIPKDKWEGSSEDERKEAIFNVLKTKKFVLLLDDIWEPLDLFAVGIPPVNDGSTSKVVFTTRFSTVCHDMGAKKGIKVKCLAWEEAFALFQTYVGEDTINSHPHIPKLAEIVVKECDGLPLALITIGRAMAGAKTPEEWEKKIQMLKNHPAKFPGMENHLFSCLSFSYDSLQDEAVKSCFLYCSLFPEDYEINCNDLVQLWIGEGLLDEYGDIKEAKNRGEEIIASLKHACLLESVGREDRWSPATYVKMHDVIRDMTLWLARQNESKKQNKFVVIDKGELVKAHEVEKWKEMKRISLFCGSFDEFMEPPSFPNLQTLLFLWIDNCGSLEEVIEVDQCDVSKIESDFGLFSRLVLLYLLGLPNRPVLDIASCLLDCTAKRAVYIRELPGNLNSLRTAMDDLKKVYEDVKEKGWVDAVIWVTLSRPANVEKVQQVLFNKLEIPSNNWEGRSENERKEAIFNVLKMKKIAVLLDDIWEPLDLFAVGIPPVIDGNKSKVVFTTQFSTVCQDMGAKGVEVKCLAWEEAFALFQTYVGEDNIF* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1290 765 Coils Coil 25 62 - -
Vvi19g1290 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 761 IPR027417 -
Vvi19g1290 765 Pfam NB-ARC domain 630 762 IPR002182 GO:0043531
Vvi19g1290 765 Pfam NB-ARC domain 160 396 IPR002182 GO:0043531
Vvi19g1290 765 Gene3D - 308 394 IPR042197 -
Vvi19g1290 765 Coils Coil 618 638 - -
Vvi19g1290 765 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 633 762 - -
Vvi19g1290 765 FunFam Probable disease resistance protein At1g63360 395 487 - -
Vvi19g1290 765 FunFam Probable disease resistance protein At1g61300 136 302 - -
Vvi19g1290 765 Coils Coil 74 94 - -
Vvi19g1290 765 FunFam Probable disease resistance protein At5g66910 307 394 - -
Vvi19g1290 765 PRINTS Disease resistance protein signature 249 263 - -
Vvi19g1290 765 PRINTS Disease resistance protein signature 173 188 - -
Vvi19g1290 765 PRINTS Disease resistance protein signature 540 556 - -
Vvi19g1290 765 PRINTS Disease resistance protein signature 343 357 - -
Vvi19g1290 765 Gene3D - 395 486 IPR036388 -
Vvi19g1290 765 Gene3D - 628 745 IPR027417 -
Vvi19g1290 765 Gene3D - 143 306 IPR027417 -
Vvi19g1290 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 410 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1290 Vvi-Chr19 21747383 21753106 Proximal