Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1288 ATGGACTTTGTGATCCCAGTCTTGGATATTGCCTCTTGCTCGTGGGATTGTATTGCCAAGCGTGCTGTTTACATCCAAAACCTCAACTCTCTAAGAACTGCAGTGGAGGACCTCAAGAACGTCTATGAAGATGAGAAGGAAAAGGTGGACCGTGAAGAGAAACTTCGGAAGAAACGTACTCGTGCAGTGGACGGCTGGATCCAGAGCGTAGAAGCCATGGAAAAAGAAGTGAATGATTTGTTGGCAAAAGGTGATGAAGATATCCAGAAGAAATGTCTTGGAACCTGTTGTCCCAAAAACTACCGTGCCAGCTACAATATTGGGAAGATGGTTCATGGAAAGATGGATGAGGTGGCTTTAAAGAAGACGGAGGGCTTCAATTTTAGTGTGGTGGCTGAACCTCTGCCCAGTCCTACCGTGATCGAGAGGCCTTTGGACAAGATGGTGGGCTTAGATTCATTGTTTGACCACGTTTACCAGCAAATGTGGAGAAGGTTCAGCGAGTTCTTTTCAATAAATTGGAGATTCCTAGTAACCTGGGAAGGCAGAAGTGAGGATGAAAGGAAAGAAGCAATATTCAATGTCTTGAAGATGAAGAAAATTGTCATCTTATTAGATGATATATGGGAGCCTCTTGATCTCTTTGCAGTGGGGATTCCTCCTGTAAATGATGGAAGTAAGTCCAAGGTGGTATTTACTACCCGTTTTTCAACTGTGTGCCGAGATATGGGAGCTAAGAAGAGGATTGAAGTCAAGTGCTTAGAATGGGCGGAAGCATTTGCTCTGTTTCAGATACATGTAGGCGAAGACACTATAAATTCCCACCCACATCTACCAAAGCTGGCGGAGATTGTTGCCAAAGAGTGTGACGGCCTCCCACTAGCCCTCATCACCATAGGACGAGCAATGGCAGGAGTAAAAACACCTGAGGAATGGGAGAAAAAAATACAAATGTTGAAGAATTATCCAGCAAAATTTCCAGGTATGGAGAATCATTTGTTTTCGCGTTTAGCGTTCAGTTATGATAGTCTACATGATGAAGTCGTGCAATCATGTTTCCTGTATTGCTCTCTATTTCCGGAGGATTATGAAATCGACTGTGATAGACTTGTACAACTATGGATTGGAGAGGGGTTTCTAGATGAATACGATGACATAAAGGAAGCAAGAAATGGAGGAGAAGAAATTATTGCAAGCTTAAATCATGCATGCCTACTGGAGGTGAATGACAATATTGATCATTATCTAGGGGAACGAGCAAGATTTGTGAAGATGCATGATATCATACGTGATATGGCTTTGTGGTTATCTTGTCAAAATGGGAATAAGAAGCAAAACAGATTTGTGGTTGTAGATGGAGGTGAATTGGTTACTTCTCAATAA 1383 0.4244 MDFVIPVLDIASCSWDCIAKRAVYIQNLNSLRTAVEDLKNVYEDEKEKVDREEKLRKKRTRAVDGWIQSVEAMEKEVNDLLAKGDEDIQKKCLGTCCPKNYRASYNIGKMVHGKMDEVALKKTEGFNFSVVAEPLPSPTVIERPLDKMVGLDSLFDHVYQQMWRRFSEFFSINWRFLVTWEGRSEDERKEAIFNVLKMKKIVILLDDIWEPLDLFAVGIPPVNDGSKSKVVFTTRFSTVCRDMGAKKRIEVKCLEWAEAFALFQIHVGEDTINSHPHLPKLAEIVAKECDGLPLALITIGRAMAGVKTPEEWEKKIQMLKNYPAKFPGMENHLFSRLAFSYDSLHDEVVQSCFLYCSLFPEDYEIDCDRLVQLWIGEGFLDEYDDIKEARNGGEEIIASLNHACLLEVNDNIDHYLGERARFVKMHDIIRDMALWLSCQNGNKKQNRFVVVDGGELVTSQ* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1288 460 Coils Coil 28 55 - -
Vvi19g1288 460 PANTHER DISEASE RESISTANCE PROTEIN RP 31 442 IPR044974 GO:0006952
Vvi19g1288 460 Pfam NB-ARC domain 180 342 IPR002182 GO:0043531
Vvi19g1288 460 FunFam Probable disease resistance protein At1g63360 341 435 - -
Vvi19g1288 460 FunFam Probable disease resistance protein At5g66910 253 340 - -
Vvi19g1288 460 Gene3D - 341 434 IPR036388 -
Vvi19g1288 460 Gene3D - 254 340 IPR042197 -
Vvi19g1288 460 Gene3D - 152 253 IPR027417 -
Vvi19g1288 460 PRINTS Disease resistance protein signature 195 209 - -
Vvi19g1288 460 PRINTS Disease resistance protein signature 289 303 - -
Vvi19g1288 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 356 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1288 Vvi-Chr19 21722700 21725005 Proximal