Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi19g1285 | ATGGCTGTGGAAGCTTGTGTTAATCCGAAAATGTTTAATAACGAGGTAGACGACGACGATGATGACGAGAGGCCATTAGTTTTCAAAAGGAGTAGTAACAGTTCAGCTTCAAATAATAATTCCAGGCTTAAAATTCAATCCATTTCGGGTTCAAAACGGCCTGATGATGCCCATTCCAATGGGCAAAAGAAGGACAAGGGAATGGCCCCGCCCATGCCTGCCAAGGGATCGGGGCGGGTGACGGGGTCAGTTAAGTCGCCGCCGCAGCAGGTGGGCAGGGGGGTAGTGGTGGGTAATTCAAAAGTGGAGGCGCAAAATAAAAAGGCTGAATTGGATAGCGATTCTGAGGATGATAAACCACTTAGTGTTAGGCTTTCTTCTGGGTTGCCAAAGGGGAAGGGGAGCTCTAACAATGTCGGTTTGGGAAGAGGGGGGGTTGGTGGTGTCAAGAAGGAAGAGGATGATGATGACGATGATAAAATTCCATTGTCATCGAAGTTCCAACTGAAATCGGATGAGAAGAAGCCTCTGCCTTTGAAAGTTAATCAAAATGGTGGAACTGATAAGAGGGATAAGTCTCCCACAGTGCTAAATAAGAAGAGACCTCTAGATGGGGTTAATTCTTCTTTGGGTCAGTCTTCGCTGGTTAAAAAGCCAAAGATTTCTGGTCAATCTGCACAGCCATTCAAAGTTACGCATGCAACTGCAAAAGCAGAACCGAAGGTGGAAGATGATGATGATGACGATATGCCTATTTCCCAGAGAATGAAGAAATCAGGAGCTAGCTCAGGCAACAAACCAGTGCCAGCAAAGCAAAAGGTAACAAAAGTTGTTTCTTCTACTTCGTTTAAGAAAACCAAAGACATCAAGTCCAAGAAGATGGAGAAAAATTCGAAATACTCTAAGTCGACAAAAGTGCCACCTAGCTCTGGTGAAGGGCAGAAGTGGACTACCTTGGTTCATAATGGTGTCATTTTTCCGCCTCCGTACAAGCCTCATGGGGTGAAGATGCTCTACAAGGGGAAACCAGTTGACTTGACTCCTGAACAAGAGGAGGTTGCCACAATGTTTGCTGTGATGTTAGACACGGACTACATGCAAAAAGAGAAATTCAAGGAGAATTTCATGGCTGATTGGAGAAAAATACTTGGAAAGAACCATGTGATTCAGAGACTGGATGATTGTGATTTCACTCCTATATACGAATGGCATCAGGAGGAAAAGGAAAAGAAAAAACAAATGAGTACTGAAGAGAAGAAGACCTTAAAAGAAGAGAAATTGAAACTAGAGGAGAAATATATGTGGGCTATTGTTGATGGTGTCAAAGAGAAGGTTGGAAACTTTAGAGTTGAACCCCCTGGGTTGTTCCGAGGCCGTGGGGAGCATCCAAAGATGGGAAAGCTGAAAAGACGGATTCATCCAAGTGACATTACTATTAATATTGGAAAGAACTCTCAAATTCCTGAATGTCCTATACCTGGTGAAAGCTGGAAAGAAGTAAAGCACGACAATACTGTTACATGGTTAGCTTTCTGGAATGATCCAATCAACCCAAAGGAATTCAAGTATGTATTTTTGGCGGCTAGCAGTTCCTTGAAGGGTCAAAGCGACAAGGAGAAATATGAGAAAGCAAGGAAACTAAAGAACTATATAAAAGACATCAGAGCAACATACACTAAGGATTTTGTAAGTAAAGATATTACAAAGCGGCAGATAGCAGTTGCCACCTATCTTATTGATAAACTAGCTCTAAGGGCAGGCAATGAGAAGGATGATGATGAGGCGGATACTGTTGGTTGCTGTACCTTGAAAGTAGAAAATGTAATACCTGAACCGCCAAATTCCTTGCAGTTTGATTTCCTCGGTAAAGATTCAATTAGATATGAAAAGACAGTTGAAGTTGAGCTTCCTGTATACAAGGCAATTGAACAGTTCCGAGTGGGGAAAAGTGGTAGTGATGATCTTTTTGACAAGCTGGATACCAGTAAACTAAATGCTCATCTAAAGGAACTAATGCCGGGCCTCACAGCAAAGGTTTTCCGTACATATAATGCATCTATCACGTTGGATGAGATGTTGAATAAAGACACCAAGGAAGGAGATGTTGCACAGAAAGTTGTAGTTTATCAGCATGCAAACAAGGAGGTTGCTATCATTTGTAACCATCAACGGACTATCTCGAAGTCTCATACAGCACAAATGACAAGGTTGACTGAGAAGATAGATGAAATGAAGGGTGTTCTTAATGGGCTGAAAACAGATTTAGCTAGAGCCAAGAAGGGGAAGCCCCCTTTGAAGGATGCTGATGGGAAGCGAAGGAACCTGACCCCTGAAGCATTAGAGAGGAAGATAGCTCAAACAAATGCAAAGATTGAGAAAATGGAGCGGGACAAGGATACGAAAGAGGATCTAAAAACTGTTGCATTGGGTACCTCAAAGATCAACTACCTTGACCCCAGGATCTCAGTTGCATGGTGTAAACGACAGGAAGTTCCCATTGAGAAGGTATTCAATAAGTCTCTCCTGGCAAAATTTGCCTGGGCAATGGACGTTCCTCCGGATTTCAGATTCTGA | 2574 | 0.4277 | MAVEACVNPKMFNNEVDDDDDDERPLVFKRSSNSSASNNNSRLKIQSISGSKRPDDAHSNGQKKDKGMAPPMPAKGSGRVTGSVKSPPQQVGRGVVVGNSKVEAQNKKAELDSDSEDDKPLSVRLSSGLPKGKGSSNNVGLGRGGVGGVKKEEDDDDDDKIPLSSKFQLKSDEKKPLPLKVNQNGGTDKRDKSPTVLNKKRPLDGVNSSLGQSSLVKKPKISGQSAQPFKVTHATAKAEPKVEDDDDDDMPISQRMKKSGASSGNKPVPAKQKVTKVVSSTSFKKTKDIKSKKMEKNSKYSKSTKVPPSSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMQKEKFKENFMADWRKILGKNHVIQRLDDCDFTPIYEWHQEEKEKKKQMSTEEKKTLKEEKLKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPSDITINIGKNSQIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRATYTKDFVSKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVIPEPPNSLQFDFLGKDSIRYEKTVEVELPVYKAIEQFRVGKSGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKDTKEGDVAQKVVVYQHANKEVAIICNHQRTISKSHTAQMTRLTEKIDEMKGVLNGLKTDLARAKKGKPPLKDADGKRRNLTPEALERKIAQTNAKIEKMERDKDTKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIEKVFNKSLLAKFAWAMDVPPDFRF* | 858 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi19g1285 | 857 | MobiDBLite | consensus disorder prediction | 29 | 55 | - | - | |
| Vvi19g1285 | 857 | Gene3D | DNA Topoisomerase I, domain 2 | 310 | 526 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vvi19g1285 | 857 | FunFam | DNA topoisomerase I | 398 | 526 | - | - | |
| Vvi19g1285 | 857 | CDD | Topo_IB_C | 535 | 728 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | MobiDBLite | consensus disorder prediction | 147 | 177 | - | - | |
| Vvi19g1285 | 857 | MobiDBLite | consensus disorder prediction | 205 | 231 | - | - | |
| Vvi19g1285 | 857 | PRINTS | Eukaryotic DNA topoisomerase I signature | 455 | 464 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | PRINTS | Eukaryotic DNA topoisomerase I signature | 571 | 590 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | PRINTS | Eukaryotic DNA topoisomerase I signature | 594 | 608 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | PRINTS | Eukaryotic DNA topoisomerase I signature | 616 | 632 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | PRINTS | Eukaryotic DNA topoisomerase I signature | 674 | 688 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | PRINTS | Eukaryotic DNA topoisomerase I signature | 810 | 821 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | Pfam | C-terminal topoisomerase domain | 789 | 857 | IPR025834 | - | |
| Vvi19g1285 | 857 | FunFam | DNA topoisomerase I | 529 | 677 | - | - | |
| Vvi19g1285 | 857 | PANTHER | DNA TOPOISOMERASE I | 99 | 857 | - | - | |
| Vvi19g1285 | 857 | MobiDBLite | consensus disorder prediction | 1 | 314 | - | - | |
| Vvi19g1285 | 857 | FunFam | DNA topoisomerase I | 330 | 414 | - | - | |
| Vvi19g1285 | 857 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 803 | 821 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 315 | 526 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | Coils | Coil | 734 | 754 | - | - | |
| Vvi19g1285 | 857 | SUPERFAMILY | DNA breaking-rejoining enzymes | 529 | 854 | IPR011010 | GO:0003677 | |
| Vvi19g1285 | 857 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 313 | 528 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vvi19g1285 | 857 | MobiDBLite | consensus disorder prediction | 105 | 121 | - | - | |
| Vvi19g1285 | 857 | SMART | topeu | 455 | 830 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vvi19g1285 | 857 | MobiDBLite | consensus disorder prediction | 283 | 300 | - | - | |
| Vvi19g1285 | 857 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 529 | 753 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | Coils | Coil | 405 | 432 | - | - | |
| Vvi19g1285 | 857 | Gene3D | - | 678 | 857 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vvi19g1285 | 857 | Gene3D | Topoisomerase I; Chain A, domain 3 | 529 | 677 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | MobiDBLite | consensus disorder prediction | 256 | 282 | - | - | |
| Vvi19g1285 | 857 | Coils | Coil | 777 | 804 | - | - | |
| Vvi19g1285 | 857 | Gene3D | - | 331 | 414 | IPR013034 | GO:0003917|GO:0006265 | |
| Vvi19g1285 | 857 | FunFam | DNA topoisomerase I | 678 | 857 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi19g1285 | Vvi-Chr19 | 21697105 | 21712303 | Dispersed |