Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1275 ATGATATCCACCTTTGCTCAAAGTGGGAGTACTGGAAAGGCAGTTGAATTGTTTCAGGAGATGCTTCAGGAGGGTCTGAGACCTGATAAGTTTTGTAGTTCTAGTGTCTTGAGCATAATAGACATGTACTCAAAATGTGGTAGTTTAGAGGAATCTTGCACAGTTTATGAGCAAATGCCTGACAAAGAATATGTTTTATGGGCCTCCCTGATCTCTGGGTTTTCAGAGCATGACCATGCAGAACAAGCTGTTCAGCTATTCAGAGAGATGCTATTAGAAGAAATTAGACCAGATCAAATGACTTTAACTGCAGCTCTAACTGCATGTTCTGCTCTTCATTCCTTAGAAAAAGGAAAGGAAGTTCATGGACTATTGACCACAAAGAGCAGCAAAAATGCTCTTGAAATCAGTCAGGAACACGTCGAAATCGCCGCATCACTGGAAGAGTGTGCTGCCATAAATCCAGCCAAGCATTTAACCTTTGTCTCCCATAGCGCTGGAAGATACTCTGCCAAAAGAAATTGGCTCCCCTCAGAGCCACCTTGCCATCCAAATCGTAAGGGTTCAGAAACTCCAGCTGTTCGAAGTGAAGTTAAGAGGCAGTCTTGTCCATCTTCCAGCATAGACATAGCTCAGAATGTTTCTGCAGAATTTACAGTTCCTATATCTGTTGGTGGCTATGCCAATGCTTCTCCATTACATGCATCCACCATTTACAAGTGTGCAGTAGTCCTACGTGACTTGAGTATGCCATACCTCCTGCGACGTATGAAAGCTGATGTGAACGCTCAGCTTTCAAACAAGTCTAACCAAGCACTGTTAACTTCTAAAATCAGGTTCAGAGAGTTTGAGCAGCAGAGGGAACAAAGAGAGAGAGGGTTGCAGATGAACACTGGACAAATTAGGCGTGATGGATCTAACGGAGGAGAAGCATTATCATCCGAAGAAACTGTCAATGAACACATGGATAAGGTCAATGTAAAGAGAAGCAATGATTGGGTTCATGGACGGAGTCTAGACAATTCTGTGGATAATGACTTGTCAATTTCTTATGAAGAGAGCAATAGGCTTAAAGGAAGCTTGGAAGTTGCGGAGTCTTCTATTATTGAGCTTAAGCTGGAGGTAAGCTCTCTACAAAGTCATGTTGATGAAATAGGCGTTGAAACACAAAAGTTCGCTAAACAACTTGCTGTTGAGATTGCTTCAGGAAAGGTTCTTACAGAAAAGGTTCTTCTGCTGAAGAAACATAATCAAGGCACCTATTCTGAGAATGCATCTTTTACAACCTCCAAGATAAAACATTTACTTCTTGAAAAAGTAGCCTGA 1326 0.4186 MISTFAQSGSTGKAVELFQEMLQEGLRPDKFCSSSVLSIIDMYSKCGSLEESCTVYEQMPDKEYVLWASLISGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGLLTTKSSKNALEISQEHVEIAASLEECAAINPAKHLTFVSHSAGRYSAKRNWLPSEPPCHPNRKGSETPAVRSEVKRQSCPSSSIDIAQNVSAEFTVPISVGGYANASPLHASTIYKCAVVLRDLSMPYLLRRMKADVNAQLSNKSNQALLTSKIRFREFEQQREQRERGLQMNTGQIRRDGSNGGEALSSEETVNEHMDKVNVKRSNDWVHGRSLDNSVDNDLSISYEESNRLKGSLEVAESSIIELKLEVSSLQSHVDEIGVETQKFAKQLAVEIASGKVLTEKVLLLKKHNQGTYSENASFTTSKIKHLLLEKVA* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1275 441 MobiDBLite consensus disorder prediction 299 318 - -
Vvi19g1275 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Vvi19g1275 441 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 38 IPR046960 GO:0003723|GO:0009451
Vvi19g1275 441 MobiDBLite consensus disorder prediction 180 199 - -
Vvi19g1275 441 Pfam PPR repeat 38 62 IPR002885 -
Vvi19g1275 441 Pfam PPR repeat 1 26 IPR002885 -
Vvi19g1275 441 Pfam PPR repeat 65 91 IPR002885 -
Vvi19g1275 441 NCBIfam pentatricopeptide repeat 1 29 IPR002885 -
Vvi19g1275 441 NCBIfam pentatricopeptide repeat 65 98 IPR002885 -
Vvi19g1275 441 Gene3D Tetratricopeptide repeat domain 1 226 IPR011990 GO:0005515
Vvi19g1275 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 28 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1275 Vvi-Chr19 21426905 21434060 Dispersed/Transposed