Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1271 ATGGCTGACCAAATTCCATTCGGTGTTGTGGAGCACATTTTGACCAAGTTGGGGTCCAAGGCGTTTCAAGAAATTGGATCCATGTATGGTGTTCCAAAGGAGCTAACCAAGCTCAAGGACAACCTCGACGTCATCAAAGGTGTACTTCTGGATGCTGAGGAACAGCAGCAGCAGAAAACTCGTGGAATAGAAGCTTGGGTCCAGATGCTCAAAGGCGCCGTGTATGACGCAGATGACTTGCTGGATGACTATGCAACCCATTATCTACAGCGAGGAGGATTCGCAAGGCAGGTCAGTGACTTCTTCTCATCTGAAAATCAAGTTGCTTTTCGCTTTAAGATGAGTCATAGACTCAACGATATCAATGAAAGGCTAGACGCTATCGAAAAAAAAATCCCCATGTTGAATCTGACTCGACGGGAGGCAATACGCATAGGAGTAGAGAATAGTTGGAGAGAAACCCACTCATTCTCGTTGCCATCTGAAATTGTAGGAAGAGAAGAAAACAAAGAGGAGATAATAAGGAAGCTGTCATCTAACAATGAAGAAATTCTTTCCGTTGTTGCCATTGTTGGCTTTGGGGGATTGGGTAAGACCACCCTCACTCAATTGGTATACAATGACGAAAGAGTAGAACATTTTGAGCGTAAGACATGGGTTTGCATTTCTGATGATTCTGGTGATGGTCTTGACGTCAAACTGTGGGTCAAAAAGATTTTAAAATCTATGGGAGTTCAGGGTGTGGAGAGTCTGACCTTGGATGGTTTGAAAGACAAGCTTCACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAAAATCCTGGAAAATGGTATGAAGTGAAAAAATTGTTGATGGTTGGTGCTAGAGGTAGTAAAATTATAGTAACCACCCGAAAACTTAATGTTGCATCCATTGTGGAAGATAAGTCTCCCCTTAGTTTGAAAGGTCTAGGAAAAAAGGAGTCTCGGGCTTTATTTTCAAAATTTGCATTTAGAGAACAGGAGATTTTGAAGCCAGAAATTGTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAGTTCCTCTCATTATTAAGACTTTAGCAATGATATTGCATTCTAAAAGAGAACTGGGATTTTGGTTGTCTATTAGAAACAATATTAAAAATTTGCTATTACTTGGAGTTGAGAACGATAATGTTGTACGGGTCTTGAAACTAAGTTATGATAATTTGCCAACACATTTGAAACAATGTTTTACATATTGTGCTTTATTTCCAAAAGACTATGAAATTGAGAAAAGGTTGGTGGTACAACTATGGATAGCACAAGGTTATATTCAATCTTCAAATGATAATAATGAGCAATTAGAGGATATAGGGGATCAATATGTTGAGGAATTATTGTCAAGGTCATTGTTGGAGAAGGCGGGAACCAATCATTTTAAAATGCATGACCTTATACATGATCTTGCACAATCAATTGTAGGATATGAGATCCTTGTTTTAGAAAGTTATGTAAATAACATTTCACAAGAAGCTCGTCATGTATCATTGTTTGAAGAGGTAAATCCTATGATAAAGGCTCTAAAGGGAAAACCCATAAGGACCTTTCTAAACCTTGGTGAAGATTCTTTTAAGGATAGTACAATTGTAAAGTCATTTTTTCCGAGTTTTATGTGTTTACGTGCATTGAGTTTAAGTCGTATGGGTGTAGAGAAGGTGCCAAAGTGTTTAGGCAAATTGAGTCATTTAAGGTATCTTGATCTTTCCAACAACAATTTTGAGGTACTTCCAAATGCTATTACAAGGTTAAAGAATTTGCAAACACTAAAACTCATATGGTGTCGGCGTTTAAAAAGAATTCCAGACAACATAGGAGAATTGATCAATCTTAGACACTTGGAGAATGATAGCTGTTTTAACTTGGCTCATATGCCACATGGAATCGGCAAGTTGACTTTACTTCAAAGTCTACCATTGTTTGTTGTTGGGAATGAGACAGGGTGGTTAAGGAATCACAAAATTGGTAGCTTGAGTGAATTGAAAGGCCTTAACCAACTAAGAGGAGGGTTATGCGTAAGTGATCTTCAAAACGTGAGGGATGTTGAACTGGTATCCAGGGGGGAAATTTTGAAAGGAAAACAATATCTTCAGTCCTTGAGATTGGAATGGGATCGGTGGGGCCGAGATGGGGGGGATGAGAGTGATAAGTCAGTGATGGAAGGCCTTCAACCACACCAACACCTAAAGGATATCTTTATAGAAGGTTATGGAGGTACGGAGTTTCCAAGTTGGATGATGAATGATGGGTTGGGTTCCCTGTTTCCCGACCTAATTAAAATTGAAATTTCGGGATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTCAACTCCCTTCTCTCAAGTCTTTGAAGCTTCATAATATGAAAGAAGTGGTGGAGTTAAAGGAGGGTTCATTAACAACGCCACTCTTCCCATCTCTTGAATCGCTCGAACTCTCTGACATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAAAAACCTCCTTCATTTTCTCATCTTTCGAAGTTATATATTTATGCATGCTCTGGTTTGGCATCACTGCATCCTTCTCCTTCTCTTTCTCAATTAAAGATCCATAATTGCCCAAACTTGACATCCATGGAACTGCCGTCATCTCTTTGTCTTTCTCAATTAGATATCAGAAAATGCCCTAACTTGGCATCCTTCAAAGTGGCTCCATTACCTTCTCTTGGGATACTCTCTCTGTTCACAGTTAGATATGGTGTGGTACGGCAGATAATGTCTGTCTCTGCTTCTTCTTCGTTGCGGTGTCTGTATATTAAAAGCATAGATGATATGATATCTCTCCCGAAGGAGTTACTTCAACATGTTTCTGGCTTGGTAACGTTAGAGATCCGTGAGTGTCCTAACTTGCAATCCTTGGAACTGCCCTCATCCCATTGTCTTTCTAAATTAAAGATTGGAGAATGCCCTAACTTGGCATCCTTCAATGTGGCTTCATTACCTCGTCTTGAGGAACTAAGCCTGCGTGGAGTCAGAGCAGAGGTACTGAGGCAGTTCATGTTTGTCTCTGCTTCTTCTTCATTGAAGTCTCTACATATACGGAAGATTGATGGTATGATATCTCTCCCAGAGGAGCCGCTTCAATATGTTTCCACTCTCGAAACTCTCCACATTGTTAAGTGCTCTGGTTTGGCAACATTACTACACTGGATGGGCAGCCTTTCCTCGCTTACGGAACTTATTATTTATGACTGCTCTGAATTGACATCACTGCCAGAAGAGGTCTATTCCCTTAAAAAACTGCAGACATTTTATTTCTGTGATTATCCACACCTAGAGGAAAGATACAACAAGGAAACAGGTAAAGACCGGGCCAAGATTGCTCGTATCCCACATGTTCGTTTCAACAGTGATACCTATATGGTAATGAAGGTAGGTCCGAAATCCCTAACCTTTCTTCCCATTTTTATTATTTAA 3522 0.3978 MADQIPFGVVEHILTKLGSKAFQEIGSMYGVPKELTKLKDNLDVIKGVLLDAEEQQQQKTRGIEAWVQMLKGAVYDADDLLDDYATHYLQRGGFARQVSDFFSSENQVAFRFKMSHRLNDINERLDAIEKKIPMLNLTRREAIRIGVENSWRETHSFSLPSEIVGREENKEEIIRKLSSNNEEILSVVAIVGFGGLGKTTLTQLVYNDERVEHFERKTWVCISDDSGDGLDVKLWVKKILKSMGVQGVESLTLDGLKDKLHEKISQKKYLLVLDDVWNENPGKWYEVKKLLMVGARGSKIIVTTRKLNVASIVEDKSPLSLKGLGKKESRALFSKFAFREQEILKPEIVEIGEEIAKMCKGVPLIIKTLAMILHSKRELGFWLSIRNNIKNLLLLGVENDNVVRVLKLSYDNLPTHLKQCFTYCALFPKDYEIEKRLVVQLWIAQGYIQSSNDNNEQLEDIGDQYVEELLSRSLLEKAGTNHFKMHDLIHDLAQSIVGYEILVLESYVNNISQEARHVSLFEEVNPMIKALKGKPIRTFLNLGEDSFKDSTIVKSFFPSFMCLRALSLSRMGVEKVPKCLGKLSHLRYLDLSNNNFEVLPNAITRLKNLQTLKLIWCRRLKRIPDNIGELINLRHLENDSCFNLAHMPHGIGKLTLLQSLPLFVVGNETGWLRNHKIGSLSELKGLNQLRGGLCVSDLQNVRDVELVSRGEILKGKQYLQSLRLEWDRWGRDGGDESDKSVMEGLQPHQHLKDIFIEGYGGTEFPSWMMNDGLGSLFPDLIKIEISGCSRCKILPPFSQLPSLKSLKLHNMKEVVELKEGSLTTPLFPSLESLELSDMPKLKELWRMDLLAEKPPSFSHLSKLYIYACSGLASLHPSPSLSQLKIHNCPNLTSMELPSSLCLSQLDIRKCPNLASFKVAPLPSLGILSLFTVRYGVVRQIMSVSASSSLRCLYIKSIDDMISLPKELLQHVSGLVTLEIRECPNLQSLELPSSHCLSKLKIGECPNLASFNVASLPRLEELSLRGVRAEVLRQFMFVSASSSLKSLHIRKIDGMISLPEEPLQYVSTLETLHIVKCSGLATLLHWMGSLSSLTELIIYDCSELTSLPEEVYSLKKLQTFYFCDYPHLEERYNKETGKDRAKIARIPHVRFNSDTYMVMKVGPKSLTFLPIFII* 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1271 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 424 IPR027417 -
Vvi19g1271 1173 Gene3D - 9 119 - -
Vvi19g1271 1173 Gene3D - 148 318 IPR027417 -
Vvi19g1271 1173 PRINTS Disease resistance protein signature 581 597 - -
Vvi19g1271 1173 PRINTS Disease resistance protein signature 359 373 - -
Vvi19g1271 1173 PRINTS Disease resistance protein signature 187 202 - -
Vvi19g1271 1173 PRINTS Disease resistance protein signature 263 277 - -
Vvi19g1271 1173 Pfam Leucine rich repeat 563 614 IPR001611 GO:0005515
Vvi19g1271 1173 FunFam Probable disease resistance protein At1g63360 410 495 - -
Vvi19g1271 1173 ProSiteProfiles Leucine-rich repeat profile. 585 607 IPR001611 GO:0005515
Vvi19g1271 1173 SUPERFAMILY L domain-like 946 1130 - -
Vvi19g1271 1173 Gene3D Ribonuclease Inhibitor 989 1139 IPR032675 -
Vvi19g1271 1173 Gene3D Ribonuclease Inhibitor 524 933 IPR032675 -
Vvi19g1271 1173 Gene3D - 323 409 IPR042197 -
Vvi19g1271 1173 SUPERFAMILY L domain-like 484 928 - -
Vvi19g1271 1173 Coils Coil 35 55 - -
Vvi19g1271 1173 Gene3D - 410 495 IPR036388 -
Vvi19g1271 1173 PANTHER DISEASE RESISTANCE PROTEIN RP 63 835 IPR044974 GO:0006952
Vvi19g1271 1173 Pfam NB-ARC domain 166 412 IPR002182 GO:0043531
Vvi19g1271 1173 Pfam Rx N-terminal domain 9 100 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1271 Vvi-Chr19 21375905 21379426 Dispersed/Proximal