Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1267 ATGGGAGTTCAGGGTGTGGAGAGTATGACCTTGGATGGTTTGAAAGACAAGCTTCACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAAAATCCTAGAAAATGGTATGAAGTGAAAAAATTGTTGATGGTTGGTGCTAAAGGTAGTAAAATTATAGTAACCACCCGAAAACTTAATGTTGCATCCATTATGGAAGATAAGTCTCCCGTTAGTTTGAAAGGTCTAGGAGAAAAGGAGTCTTGGGATTTATTTTCAAAATTTGCATTTAGAGAACAGGAGATTTTGAAGCCAGAAATTGTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAGTTCCTCTCGTTATCAAGTCTTTAGCAATGATATTGCAGTCTAAAAGAGAACTGGGGCAGTGGTTGTCTATTAGAAACAATAAAAATTTGCTGTCACTTGGAGATGAAAATGAGAATGTTCTAGGGGTGCTGAAATTAAGTTATGATAATTTGTCAACTCATTTGAGACAATGTTTTACATATTGTGCTTTATTTCCAAAAGACTATGAGATTGAGAAAAAGTTGGTGGTACAACTATGGATAGCACAAGGTTATATTCAATCTTCAAATGATAATAATGAGCAATTAGAGGATATAGGGGATCAATATTTTGAGGAATTATTGTCAAGGTCATTGTTGGAGAAGGCGGGAAGCAATCATCTTACTAATACATTAAGGTATAAAATGCATGACCTTATACATGATCTTGCACAATCAATTATAGGATCTGAGGTCCTCATTTTAAGAAATGATGTAAAAAACATTTCAAAAGAAGTTCGTCATGTATCATCGTTTGAAAAGGTGAATCCTATAATAGAGGCTCTAAAGGAAAAACCTATAAGGACCTTTTTATACCAATATAGATATAATTTTGAATATGATAGTAAAGTTGTGAATTCATTTATTTCAAGTTTTATGTGTTTACGTGTGTTGAGCTTAAATGGCTTCCTATCAAAGAAGGTGCCAAACTGTTTAGGTAAATTGAGTCATTTAAGGTATCTTGATCTTTCCTACAATACTTTTGAGGTACTTCCGAATGCTATTACAAGGTTAAAGAATTTGCAAACACTGAAACTCAAAGTGTGTCCGAATTTGAAAAAACTTCCAAAAAATATAAGGCAACTTATCAATCTTAGACACTTGGAGAATGAGAGATGGAGCGACTTGACTCATATGCCACGTGGAATAGGAAAGTTGACTTTACTTCAAAGTCTACCATTGTTTGTTGTTGGGAATGAGACAGGGAGGTTAAGGAATCACAAAATTGGTAGCTTGATTGAGTTGGAAAGCCTGAACCATCTAAGAGGAGGGTTATGCATAAGTAATCTTCAAAACGTGAGGGATGTTGAACTGGTATCCAGGGGAGAAATTTTGAAAGGAAAACAATATCTTCAGTCCTTGAGATTGGAATGGAATCGGTCGGGCCAAGATGGGGGGGATGAGGGTGATAAGTCAGTGATGGAAGGCCTTCAACCACACCCACAATTAAAGGATATCTTTATAGAAGGTTATGGAGGTACGGAGTTTCCAAGTTGGATGATGAATGATAGGTTGGGTTCCCTGCTTCCCGACTTAATTAAAATTGAAATTTCGGGATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTCAACTCCCTTCTCTCAAGTCTTTGAAGCTGGATGATATGAAAGAAGTGGTGGAGATAAAGGAGGGTTCATTGGCAACGCCACTTTTCCCATCTCTTGAATCGCTCGAACTCTCTCACATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAGGAAGGTCCTTCATTTGCTCATCTTTCAAAGTTGCATATTCATAAATGCTCTGGTTTGGCATCACTGCATTCTTCTCCTTCTCTTTCTCAATTAGAGATCAGAAATTGCCATAACTTGGCATCCTTGGAACTGCCGCCGTCCCATTGTCTTTCTAAATTAAAGATCGTAAAATGCCCTAACTTGGCATCCTTCAATGTGGCTTCATTACCTCGTCTTGAGGAATTAAGCCTGCGTGGAGTCAGAGCAGAGGTACTGAGGCAGTTAATGTTTGTCTCTGCTTCTTCTTCATTGAAGTCTTTGCATATACGGAAGATTGATGGTATGATATCTATCCCAGAGGAGCCGCTTCAATGTGTTTCCACTCTCGAAACTCTCTACATTGTTGAGTGCTCTGGTTTGGCAACATTACTACACTGGATGGGCAGCCTTTCCTCGCTTACGAAACTTATTATTTATTACTGCTCTGAATTGACATCACTGCCAGAAGAGATCTATTCCCTTAAAAAACTGCAGACATTTTATTTCTGTGATTATCCACACCTAGAGGAAAGATACAAGAAGGAAACAGGCGAAGACCGGGCCAAGATTGCTCATATCCCACATGTTCGTTTCAACAGTGATTCCTATATGGAATTGGAGGTAGGTCCGAAATCCCTAACCTTTCTTCCCATTTTTATTAATTTAGAATCAGAATGCTATATTTTCATTTTGTCTCTGGTAGTTCTTTTATGTTGGCACCTCATGTGTTTGTTTAAATGCTCACATCAATAA 2619 0.3769 MGVQGVESMTLDGLKDKLHEKISQKKYLLVLDDVWNENPRKWYEVKKLLMVGAKGSKIIVTTRKLNVASIMEDKSPVSLKGLGEKESWDLFSKFAFREQEILKPEIVEIGEEIAKMCKGVPLVIKSLAMILQSKRELGQWLSIRNNKNLLSLGDENENVLGVLKLSYDNLSTHLRQCFTYCALFPKDYEIEKKLVVQLWIAQGYIQSSNDNNEQLEDIGDQYFEELLSRSLLEKAGSNHLTNTLRYKMHDLIHDLAQSIIGSEVLILRNDVKNISKEVRHVSSFEKVNPIIEALKEKPIRTFLYQYRYNFEYDSKVVNSFISSFMCLRVLSLNGFLSKKVPNCLGKLSHLRYLDLSYNTFEVLPNAITRLKNLQTLKLKVCPNLKKLPKNIRQLINLRHLENERWSDLTHMPRGIGKLTLLQSLPLFVVGNETGRLRNHKIGSLIELESLNHLRGGLCISNLQNVRDVELVSRGEILKGKQYLQSLRLEWNRSGQDGGDEGDKSVMEGLQPHPQLKDIFIEGYGGTEFPSWMMNDRLGSLLPDLIKIEISGCSRCKILPPFSQLPSLKSLKLDDMKEVVEIKEGSLATPLFPSLESLELSHMPKLKELWRMDLLAEEGPSFAHLSKLHIHKCSGLASLHSSPSLSQLEIRNCHNLASLELPPSHCLSKLKIVKCPNLASFNVASLPRLEELSLRGVRAEVLRQLMFVSASSSLKSLHIRKIDGMISIPEEPLQCVSTLETLYIVECSGLATLLHWMGSLSSLTKLIIYYCSELTSLPEEIYSLKKLQTFYFCDYPHLEERYKKETGEDRAKIAHIPHVRFNSDSYMELEVGPKSLTFLPIFINLESECYIFILSLVVLLCWHLMCLFKCSHQ* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1267 872 Gene3D - 167 258 IPR036388 -
Vvi19g1267 872 FunFam Probable disease resistance protein At1g63360 167 258 - -
Vvi19g1267 872 PRINTS Disease resistance protein signature 368 384 - -
Vvi19g1267 872 PRINTS Disease resistance protein signature 117 131 - -
Vvi19g1267 872 PRINTS Disease resistance protein signature 21 35 - -
Vvi19g1267 872 Gene3D - 81 166 IPR042197 -
Vvi19g1267 872 Gene3D Ribonuclease Inhibitor 309 633 IPR032675 -
Vvi19g1267 872 Gene3D Ribonuclease Inhibitor 659 807 IPR032675 -
Vvi19g1267 872 Pfam NB-ARC domain 14 169 IPR002182 GO:0043531
Vvi19g1267 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 181 IPR027417 -
Vvi19g1267 872 SUPERFAMILY RNI-like 591 797 - -
Vvi19g1267 872 Gene3D - 2 77 IPR027417 -
Vvi19g1267 872 PANTHER DISEASE RESISTANCE PROTEIN RP 14 668 IPR044974 GO:0006952
Vvi19g1267 872 SUPERFAMILY L domain-like 247 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1267 Vvi-Chr19 21321945 21324563 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1267 308 429 Receptor kinase-like Gene Family AT4G13920 31.452 2.15e-07 52.8