Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1264 ATGGCAAGAACCGACAAAAATATTGAAGTTGTAATTCTCTCAAGGTGTGTAGCCTTACTTAAAGCTTGCGGAAATGCTTGTGCATCGCCTATGGCAAGTACAGTTATGATTCCAGAAGGGACATATGCACTAGGCCAAATAACCATTGGAGGCCCTTGCAAGGCTCCTATCAATTTCATTGTCCAAGGCACTATGAAGGCCCCGGTGGATACCAGCAGGTTCAAGGCTGAAGCTGGTTGGATTGCTTTCCAACAAATCGACCAATTCACGTTGTTTGGTGGTGGAGTTTTTTATGGCCAAGGAAAAACTGTATGGGGCAGAAAAAGCCCCCGTTCTGCATATTGCAACCAACTTCCCATTAATCTGAGGTTCAACTTCATCACCAATAGCATGGTCAACGACATAACTTCAAGAGACAGCAAACAGTTTCATATTAATCTTTTAGGGTGCAAGAATTTGACTTTCTACAACATTGCAATTAGTGCACCAGAAGAGAGCCTTAACACAGATCGATGGAAATCACATTGGACGTTCCTCAGGGATCAATATCACCGATTCAACCATAGAAACCGGAGATGA 579 0.4318 MARTDKNIEVVILSRCVALLKACGNACASPMASTVMIPEGTYALGQITIGGPCKAPINFIVQGTMKAPVDTSRFKAEAGWIAFQQIDQFTLFGGGVFYGQGKTVWGRKSPRSAYCNQLPINLRFNFITNSMVNDITSRDSKQFHINLLGCKNLTFYNIAISAPEESLNTDRWKSHWTFLRDQYHRFNHRNRR* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1264 192 FunFam Uncharacterized protein 16 174 - -
Vvi19g1264 192 Pfam Glycosyl hydrolases family 28 27 170 IPR000743 GO:0004650|GO:0005975
Vvi19g1264 192 PANTHER - 18 171 - -
Vvi19g1264 192 SUPERFAMILY Pectin lyase-like 18 170 IPR011050 -
Vvi19g1264 192 Gene3D - 16 174 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1264 Vvi-Chr19 21267519 21281525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1264 18 170 Glycoside Hydrolase AT3G07820 49.351 2.81e-44 149