Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1258 ATGTATCGAATCCTTTGCTTCCTCTTCTTTCTCTCATATTCTCCAGTTATTTGTTTCTCTTTGTCTAATTCTACAAAGCTGTGTCCTCATCACCAGAATGTTGCCTTGCTTCGACTTAAGCAATTATTTTCCATAGATGTCTCCGCTTCTTCTTCGGATGATTGCAATTTAGCTTCTTTTGCCAAGACAGACACTTGGAAGGAAGGCACTAATTGTTGCTCATGGGATGGTGTCACATGCAATAGGGTTACAGGCCTTATAATCGGGCTCGACCTTAGTTGCACTAAGTTTGGACAATTCCGGAGAATGACTCATCTCAACCTTTCTTTCTCTGGATTTTCAGGTGTAATTGCTCCAGAAATCTCCCACCTATCCAACTTGGTTTCACTTGATCTTTCCATCTATAGTGGATTAGGACTTGAAACAAGTAGCTTCATTGCACTTGCTCGAAACCTAACGAAGTTGCAGAAACTTCATCTACGAGGTATAAATGTCTCTTCCATTTTGCCTATCTCCCTACTGAATTTATCTTCTTTGAGATCTATGGATCTCTCTTCTTGTTCCATTCCCTCGGTTTTAGGGAACCTCACACAAATCACTCACTTGGACCTCTCAAGAAATCAATTTGATGGTGAAATTTCAAATGTTTTCAATAAGATTAGAAAGCTAATTGTATTAGATCTTTCCAGTAATAGTTTCAGAGGTCAGTTCATAGCATCACTTGACAATCTAACAGAACTTTCTTTCTTAGACCTTTCAAACAATAACCTAGAAGGTATCATTCCTTCTCATGTGAAGGAACTTTCAAGTCTATCGGACATCCATTTGTCCAATAACTTGTTGAATGGGACAATACCATCTTGGTTGTTTAGTCTACCATCATTGATAAGGTTAGATCTCAGTCATAACAAACTCAATGGTCATATTGATGAATTCCAATCCCCTTCATTGGAGTCCATTGATTTGAGTAGTAATGAGTTAGATGGGCCAGTTCCAAGTTCCATCTTTGAACTTGTAAATCTTACATATCTCCAACTTTCTTCAAATAACTTGGGACCACTTCCATCATTGATTTGTGAAATGAGTTATATTAGTGTTCTGGATTTCTCTAATAACAACTTGAGTGGATTAATTCCACAATGTTTGGGAAACTTCAGTGAGTCTCTCTCTGTTTTGGATTTGCGAATGAATCAGCTTCATGGTAACATTCCTGAAACGTTTTCGAAGGGCAATTTTATCAGGAATCTTGGCTTCAATGGAAATCAATTGGAAGGGCCTCTACCACGATCTTTGATCAATTGTAGAAGGTTGCAAGTTTTAGACCTTGGAAATAATAGAATAAATGATACATTCCCTTATTGGTTGGAAACTCTTCCAGAGCTACAAGTTTTGATCTTGCGTTCTAATAGGTTCCATGGTCACATAAGCGGTTCAAATTTCCAATTTCCATTTCCCAAGTTACGAATAATGGATCTTTCACGCAATGATTTCTCTGGTAGTTTACCGGAAATGTATTTGAAGAATTTCAAGGCAATGATGAATGTCACTGAGGATAAAATGAAACTGAAATATATGGGGGAATACTATTATCGAGATTCGATAATGGGAACAATCAAAGGATTTGATTTTGAATTTGTAATTTTGTCTACCTTCACAACAATTGATTTGTCCAGCAATAGATTCCAAGGAGAGATTCTAGATTTCATTGGAAGTCTTAGTTCACTTCGAGAACTCAACTTGTCTCATAACAATCTTACAGGGCATATTCCATCATCATTGGGGAATCTAATGGTGCTTGAATCATTAGACCTCTCTTCAAACAAGCTTAGTGGGAGAATTCCAAGGGAGTTGACAAGTCTGACATTTCTTGAAGTCTTAAATCTTTCGAAAAATCATCTCACTGGAGTCATTCCTCGAGGCAACCAATTTGATACATTTGCAAATAATTCATATAGTGGGAATATAGGATTATGTGGACTTCCCTTGTCTAAGAAATGTGTAGTTGATGAAGCACCACAACCTCCCAAAGAAGAGGAGGTGGAATCCGATACTGGATTTGATTGGAAAGTCATATTGATGGGGTATGGTTGTGGACTAGTAGTTGGATTGTTTATGGGGTGCCTCGTCTTCTTAACAAGAAAACCTAAATGGTTTGTAACAATGATTGAAGGAGATAGACATAAGAAGGTTAGAAGGTCAACAAGGAGCACTCGCAGGCATGGAGCAAGAAGAAGTTAG 2238 0.3776 MYRILCFLFFLSYSPVICFSLSNSTKLCPHHQNVALLRLKQLFSIDVSASSSDDCNLASFAKTDTWKEGTNCCSWDGVTCNRVTGLIIGLDLSCTKFGQFRRMTHLNLSFSGFSGVIAPEISHLSNLVSLDLSIYSGLGLETSSFIALARNLTKLQKLHLRGINVSSILPISLLNLSSLRSMDLSSCSIPSVLGNLTQITHLDLSRNQFDGEISNVFNKIRKLIVLDLSSNSFRGQFIASLDNLTELSFLDLSNNNLEGIIPSHVKELSSLSDIHLSNNLLNGTIPSWLFSLPSLIRLDLSHNKLNGHIDEFQSPSLESIDLSSNELDGPVPSSIFELVNLTYLQLSSNNLGPLPSLICEMSYISVLDFSNNNLSGLIPQCLGNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMNVTEDKMKLKYMGEYYYRDSIMGTIKGFDFEFVILSTFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVVDEAPQPPKEEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKWFVTMIEGDRHKKVRRSTRSTRRHGARRS* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1258 745 Gene3D Ribonuclease Inhibitor 30 313 IPR032675 -
Vvi19g1258 745 PRINTS Leucine-rich repeat signature 572 585 - -
Vvi19g1258 745 PRINTS Leucine-rich repeat signature 247 260 - -
Vvi19g1258 745 ProSiteProfiles Leucine-rich repeat profile. 340 361 IPR001611 GO:0005515
Vvi19g1258 745 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 544 666 - -
Vvi19g1258 745 ProSiteProfiles Leucine-rich repeat profile. 574 596 IPR001611 GO:0005515
Vvi19g1258 745 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 94 314 - -
Vvi19g1258 745 Pfam Leucine rich repeat N-terminal domain 32 81 IPR013210 -
Vvi19g1258 745 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 315 522 - -
Vvi19g1258 745 Gene3D Ribonuclease Inhibitor 314 673 IPR032675 -
Vvi19g1258 745 Pfam Leucine rich repeat 552 609 IPR001611 GO:0005515
Vvi19g1258 745 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515
Vvi19g1258 745 Pfam Leucine rich repeat 435 497 IPR001611 GO:0005515
Vvi19g1258 745 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 27 95 IPR046956 -
Vvi19g1258 745 SMART LRR_typ_2 338 361 IPR003591 -
Vvi19g1258 745 SMART LRR_typ_2 620 643 IPR003591 -
Vvi19g1258 745 SMART LRR_typ_2 268 292 IPR003591 -
Vvi19g1258 745 SMART LRR_typ_2 572 596 IPR003591 -
Vvi19g1258 745 SMART LRR_typ_2 196 219 IPR003591 -
Vvi19g1258 745 SMART LRR_typ_2 458 482 IPR003591 -
Vvi19g1258 745 SMART LRR_typ_2 244 264 IPR003591 -
Vvi19g1258 745 SMART LRR_typ_2 484 507 IPR003591 -
Vvi19g1258 745 SUPERFAMILY L domain-like 314 663 - -
Vvi19g1258 745 SUPERFAMILY L domain-like 66 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1258 Vvi-Chr19 21188377 21191382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1258 7 719 Receptor kinase-like Gene Family AT3G28890 38.670 3.72e-139 424