Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1251 ATGGCTGACCAAATTCCATTCGGTGTTGTGGAGCACATTTTGACCAAGTTGGGGTCCAAGGCGTTTCAAGAAATTGGATCCATGTATGGTGTTCCAAAGGAGATGACCAAGCTCAAGGACAACCTGGACGTCATCAAAGGTGTACTTCTGGATGCTGAGGAACAGCAGCAGCAGAAAACTCGTGGAATAGAAGCTTGGGTCCAGAAGCTCAAAGGCGCCGTGTATGACGCAGATGACTTGCTGGATGATTATGCAACCCATTATCTACAGCGAGGAGGATTCGCAAGGCAGGTCAGTGACTTCTTCTCACCTGTAAATCAAGTTGTTTTTCGCTTTAAGATGAGTCATAGACTCAAGGATATCAATGAAAGGCTGGACGCTATCGAAAAAAAAATCCCCATGTTAAATCTCATTCCACGGGACATAGTACTACACACACGGGAAGAGAGGAGTGGGAGAGAAACCCACTCATTCTTGTTGCCGTCTGATATTGTAGGAAGAGAAGAAAACAAAGAGGAGATAATAAGGAAGCTGTCATCTAACAATGAAGAAATTCTTTCCGTTGTTGCCATTGTTGGCTTTGGGGGATTGGGTAAGACCACCCTCACTCAATCGGTATACAATGACCAAAGAGTAAAACATTTTCAGTATAAGACATGGGTTTGCATTTCTGATGATTCTGGTGATGGTCTTGACGTCAAACTGTGGGTCAAAAAGATTTTAAAATCTATGGGAGTTCAGGATGTGGAGAGTCTGACCTTGGATGGTTTGAAAGACAAGCTTCACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAAAATCCTGGAAAATGGTATGAACTGAAAAAATTGTTGATGGTTGGTGCTAGAGGAAGTAAAATTATAGTAACCACCCGAAAACTTAATGTTGCATCCATTATGGAAGATAAGTCTCCCGTTAGTTTGAAAGGTCTAGGAGAAAAGGAGTCTTGGGCTTTATTTTCAAAATTTGCATTTAGAGAACAGGAGATTTTGAAGCCAGAAATTGTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAGTTCCTCTCGTTATTAAGTCTTTAGCAATGATATTGCAGTCTAAAAGAGAACCGGGGCAGTGGTTGTCTATTAGAAACAATAAAAATTTGCTGTCACTTGGAGATGAAAATGAGAATGTTCTAGGGGTGCTGAAATTAAGTTATGATAATTTGTCAACTCATTTGAGACAATGTTTTACATATTGTGCTTTATTTCCAAAAGACTATGAGATTGAGAAAAAGTTGGTGGTACATCTATGGATAGCACAAGGTTATATTCAATCTTCAAATGATAATAATGAGCAAGTAGAGGATATAGGGGATCAATATGTTGAGGAATTATTGTCAAGGTCATTGTTGGAGAAGGCGGGAACCAATCATTTTAAAATGCATGACCTTATACATGATCTTGCACAATCAATTGTAGGATCTGAGATCCTTGTTTTAAGAAGTGATGTAAATAACATTCCAGAAGAAGCTCGTCATGTATCATTGTTTGAAGAGATAAATCCTATGATAAAGGCTCTAAAGGGAAAACCCATAAGAACCTTTCTTTGTAAATATTCTTATAAAGATAGTACAATTGTAAATTCATTTTTTTCATGTTTTATGTGTTTACGTGCATTGAGTTTAAGTTGTACGGGTATAAAGGAGGTGCCAGGGCATTTAGGCAAATTGAGTCATTTAAGGTATCTTGATCTTTCCTACAATGAGTTTAAGGTACTTCCGAATGCTATTACAAGGTTAAAGAATTTGCAAACACTAAAACTCACCAGCTGTAAGAGATTAAAAGGAATTCCAGACAATATAGGAGAATTGATCAATCTTAGACACTTGGAGAATGATAGTTGTTATAACTTGGCTCATATGCCACATGGAATCGGCAAGTTGACTTTACTTCGAAGTCTACCATTGTTTGTGGTTGGGAATGACATAGGGTTAAGGAATCACAAAATTGGTAGCTTGAGTGAATTGAAAGGCCTTAACCAACTAGGAGGAGGGTTATGCATAAGTAATCTTCAAAACGTGAGGGATGTTGAACTGGTATCCAGGGGGGAAATTTTGAAAGGAAAACAATATCTTCAGTCCTTGAGATTGGAATGGAATCGGCGGGGCCAAGATGGGGAGTATGAGGGTGATAAGTCAGTGATGGAAGGCCTTCAACCACACCGACACCTAAAGGATATCTTTATAGAAGGTTATGGAGGTACGGAGTTTCCAAGTTGGATGATGAATGATGGGTTGGGTTCCCTGTTTCCCTACCTAATTGAAATTGAAATTTGGGAATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTGAACTCCCTTCTCTCAAGTCTTTGAAGCTTGATGATATGAAAGAAGCGGTGGAGTTAAAGGAGGGTTCATTAACAACGCCACTCTTCCCATCTCTTGAATCGCTCAAACTCTGTTCCATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAGGAGGGTCCTTCATTTTCTCATCTTTCGAAGCATTTTGGGCGAGGAGGCTCGACTTGTGATCATCAATAA 2616 0.3926 MADQIPFGVVEHILTKLGSKAFQEIGSMYGVPKEMTKLKDNLDVIKGVLLDAEEQQQQKTRGIEAWVQKLKGAVYDADDLLDDYATHYLQRGGFARQVSDFFSPVNQVVFRFKMSHRLKDINERLDAIEKKIPMLNLIPRDIVLHTREERSGRETHSFLLPSDIVGREENKEEIIRKLSSNNEEILSVVAIVGFGGLGKTTLTQSVYNDQRVKHFQYKTWVCISDDSGDGLDVKLWVKKILKSMGVQDVESLTLDGLKDKLHEKISQKKYLLVLDDVWNENPGKWYELKKLLMVGARGSKIIVTTRKLNVASIMEDKSPVSLKGLGEKESWALFSKFAFREQEILKPEIVEIGEEIAKMCKGVPLVIKSLAMILQSKREPGQWLSIRNNKNLLSLGDENENVLGVLKLSYDNLSTHLRQCFTYCALFPKDYEIEKKLVVHLWIAQGYIQSSNDNNEQVEDIGDQYVEELLSRSLLEKAGTNHFKMHDLIHDLAQSIVGSEILVLRSDVNNIPEEARHVSLFEEINPMIKALKGKPIRTFLCKYSYKDSTIVNSFFSCFMCLRALSLSCTGIKEVPGHLGKLSHLRYLDLSYNEFKVLPNAITRLKNLQTLKLTSCKRLKGIPDNIGELINLRHLENDSCYNLAHMPHGIGKLTLLRSLPLFVVGNDIGLRNHKIGSLSELKGLNQLGGGLCISNLQNVRDVELVSRGEILKGKQYLQSLRLEWNRRGQDGEYEGDKSVMEGLQPHRHLKDIFIEGYGGTEFPSWMMNDGLGSLFPYLIEIEIWECSRCKILPPFSELPSLKSLKLDDMKEAVELKEGSLTTPLFPSLESLKLCSMPKLKELWRMDLLAEEGPSFSHLSKHFGRGGSTCDHQ* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1251 871 Gene3D - 154 320 IPR027417 -
Vvi19g1251 871 PANTHER DISEASE RESISTANCE PROTEIN RP 58 838 IPR044974 GO:0006952
Vvi19g1251 871 Gene3D Ribonuclease Inhibitor 528 863 IPR032675 -
Vvi19g1251 871 FunFam Probable disease resistance protein At1g61300 146 319 - -
Vvi19g1251 871 Pfam Rx N-terminal domain 9 92 IPR041118 -
Vvi19g1251 871 ProSiteProfiles Leucine-rich repeat profile. 583 605 IPR001611 GO:0005515
Vvi19g1251 871 Pfam Leucine rich repeat 561 615 IPR001611 GO:0005515
Vvi19g1251 871 Gene3D - 410 496 IPR036388 -
Vvi19g1251 871 Pfam NB-ARC domain 167 412 IPR002182 GO:0043531
Vvi19g1251 871 Gene3D - 9 118 - -
Vvi19g1251 871 PRINTS Disease resistance protein signature 188 203 - -
Vvi19g1251 871 PRINTS Disease resistance protein signature 264 278 - -
Vvi19g1251 871 PRINTS Disease resistance protein signature 360 374 - -
Vvi19g1251 871 PRINTS Disease resistance protein signature 602 618 - -
Vvi19g1251 871 Coils Coil 35 55 - -
Vvi19g1251 871 FunFam Probable disease resistance protein At1g63360 410 495 - -
Vvi19g1251 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 424 IPR027417 -
Vvi19g1251 871 SUPERFAMILY L domain-like 484 839 - -
Vvi19g1251 871 Gene3D - 324 409 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1251 Vvi-Chr19 21058508 21068569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1251 186 703 WRKY Transcription Factor Family AT5G45050 22.438 8.14e-11 64.3