Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1249 ATGTTGGCTAAGGCCTATGTTAGGGTTGGTATGTTTGATAAAGCCAATGATGCTCTGTTTCAAACAAGAAGACAAGGGTTTGTTCCTCATATAATGTCTTGCAATTTTTTTTTGATGAATCGTTTGATTGAATATGGGAAGATTGATATGGCGGTGGCAATTTATCGACATTTGAAGAGGTTGGGCTTGAACCCAATTGATTATACTTATGGCCTTTTCATAAAGGCGCTTTGTAGGAAGAGGAATTTTGAAGAAGTTGTTGATGCGTTTAGGGAGATGGAAGAAGTTGGAGTGAACCCTACTGCCCTAATGTGCAGTACATATATTGAAAGGTTTTGTTCCCATAAGGGGTCGGATTTGGATTATGAAGCCCCCCGAGCATTAAGAGCAGCAAAGTGGCCAATTGATGCCTTTGCTTATGCAGCAGTCATTCGTGGGGTGAATTGCTTGCGAAAAGCCCGTGATATTTTCAGTGATATGAAGGAGCGAGGTATTAAACCTGATGTTATCGCTTACACAATTGTGCTCGATGCTCATTCGAAGGTAAATTTGAAGATGGCTCGTTCCCTTCAATTTTTCAAAGGGAAGCGAGGAAGAAAATTTGGGGCTGCGGAAGACATGTCTAAGGAGGATATTGCTGCGAACAGAGCAATTGGGTTGTATGGAGATCTCAGGAGTAAGAGACCAGAAAATTTGTGGACAATCCACTCTCAACCCGCCTTCCCAAAGTCTCACAAAGAGGATGACCATTCAGTTATCTGGGCCCGAGAGATAGTTTCCTTCCAAAGTCTGTTATCTGGTGCGAAACCAGTGGGGAGAAAACCTTCATCTGGTGTTTATGGTAACCTTGCTACAGGAGCATCTTCCAGTTCTGAGGAGTCGACAGCCTTGGCAATGGTTGAGGAAGAATTTGGACTTCAACAGCTGGATTCACTGCCTGCTGATGTATCACTTCCTCTTCGGCATGCATTGGATAAGTGTCGGGAATCTCCTCCCACTGATTGA 1005 0.4358 MLAKAYVRVGMFDKANDALFQTRRQGFVPHIMSCNFFLMNRLIEYGKIDMAVAIYRHLKRLGLNPIDYTYGLFIKALCRKRNFEEVVDAFREMEEVGVNPTALMCSTYIERFCSHKGSDLDYEAPRALRAAKWPIDAFAYAAVIRGVNCLRKARDIFSDMKERGIKPDVIAYTIVLDAHSKVNLKMARSLQFFKGKRGRKFGAAEDMSKEDIAANRAIGLYGDLRSKRPENLWTIHSQPAFPKSHKEDDHSVIWAREIVSFQSLLSGAKPVGRKPSSGVYGNLATGASSSSEESTALAMVEEEFGLQQLDSLPADVSLPLRHALDKCRESPPTD* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1249 334 Gene3D Tetratricopeptide repeat domain 1 123 IPR011990 GO:0005515
Vvi19g1249 334 NCBIfam pentatricopeptide repeat 149 169 IPR002885 -
Vvi19g1249 334 NCBIfam pentatricopeptide repeat 68 101 IPR002885 -
Vvi19g1249 334 Gene3D Tetratricopeptide repeat domain 124 303 IPR011990 GO:0005515
Vvi19g1249 334 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 4 186 - -
Vvi19g1249 334 Pfam PPR repeat family 149 180 IPR002885 -
Vvi19g1249 334 Pfam PPR repeat 68 98 IPR002885 -
Vvi19g1249 334 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 66 100 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1249 Vvi-Chr19 21018784 21021207 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1249 2 204 Glycosyltransferase AT1G05670 25.837 1.58e-13 69.7