Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1244 ATGAAGGAGAGTGGCAGGAAACAAGGTGCAGTTTCGCCATGCGCCGCATGCAAGCTTCTTCGCCGTAGATGTGCTCAGGACTGTGTCTTTGCTCCTTACTTTCCGGCTGATGAGCCACATAAGTTTGCCAGTGTGCACAAGGTGTTTGGAGCAAGCAATGTCAATAAGATGTTACAGGAGTTGCCGGAGCACCAGCGCAGTGATGCTGTGAGTTCCATGGTGTACGAAGCAAACGCCAGGGTGCGTGACCCGGTTTATGGCTGTGTTGGGGCCATATCGTCCCTGCAGCAACAGATCGACGCCCTTCAAACACAATTGGCACTGGTGCAGGCTGAAGTAGTGCAGATGAGAATGAACCAATTCACATCCTCAACCTCCAACCAAGCCACAGATTCACCAGAAAACGCCTCACACACATCCAGGCTTGCTGCATCTCCTCAGACCAAGTCCTTTTTTTCCATGGACATGGTGGTAGATCATGCCAATATGGTGGAGTCCCTTTGGTCATACTAG 513 0.5127 MKESGRKQGAVSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALVQAEVVQMRMNQFTSSTSNQATDSPENASHTSRLAASPQTKSFFSMDMVVDHANMVESLWSY* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1244 170 MobiDBLite consensus disorder prediction 122 144 - -
Vvi19g1244 170 Coils Coil 92 119 - -
Vvi19g1244 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 138 - -
Vvi19g1244 170 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Vvi19g1244 170 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1244 Vvi-Chr19 20862920 20865627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1244 1 169 AS2 family AT1G31320 70.175 2.19e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi19g1244 LOB 8e-44 No_clan