Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1239 ATGGGAGTTCAGGATGTGGAGACCTTGGATGGTTTGAAAGACGTGCTTTACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAAAATCCTAGAAAATGGTATGCAGTGAAAAAATTGTTGATGGTTGGTGCTAGAGGTAGTAAAATTATAGTAACCACCCGAAAACTTTATGTTGCATCCATTATGGGAGATAAGTCTCCCGTTAGTTTGAAAGGTCTAGGAGAAAAGGAGTCTTGGGCTTTATTTTCAAAATTAGCATTTGGAGAACAGGAGATTTTGGAGCCAGAAATTGTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAGTTCCTCTCGTTATTAAGTCTTTAGCAACGATATTGCAGTCTAAAAGAGAACCGGGGCAGTGGTTGTCTATTAGAAACAATAAAAATTTGCTGTCACTTGGAGATGAAAATGAGAATGTTCTAGGGGTGCTGAAACTAAGTTATGATAATTTGCCAACACATTTGAAACAATGCTTTACATATTGTGCTTTATTTCCAAAAGACTATGAGATTGAGAAAAAGTCATTGTTGAAGACGGCAAGAACCAATCATTTTACTAATACATTAATGTATAAAATGCATAACCTTATGCATGATCTTGCACAATTAATTGTAAAACCGGAGATCCTTGTTTTAAGAAGTGGTGACAATAACATTCCAAAAGAAGCTCGTCATGTATTATTGTTTGAAGAGGTAAATCCTATTATAAATGCTTCACAGAAAATTTCCTTGAGGACTTTTTTCATGGTTAATGAGGATGGTTTTGAAGATGATTCAAAAGATGACTCAATTATAAACACAAGCTCTAAGTGTTTACGTGTGTTGAGTCTAAATAAGTTTAATATAAAGAAGGTGCCAAAGTTTGTAGGCAAATTGAGTCATTTAAGATATCTTGATCTTTCCAACAATGATTTTAAGGTACTTCCGAGTGCTATTGCAAGGTTAAAGCATTTGCAAACCCTGAAAGTCATTGATTGCGTGAATCTAAAAGAACTTCCAAAAGATACAAGAGAGTTGGTTCATCTCAGACACTTGGAGAATGATGGGTGTGCAAATTTGACTCATATGCCATGTGGAATAGGAGAGCTGACTTCACTTCAAAGCCTACCAATATTTGTCGTTGGGAATAGGAGAGGGTACTCAAGGGATCGTAAAATCGGCGGGTTGAATGAACTGGAAAAGCTTGACTACCTCAGAGGACAGCTACGAATTAAAAACCTTGAAAATGTGTGGAATGCTGAGGAATCCAGCGAGGCAAAGTTGGCAAAAAAACAACACATTCGTTCCTTGAGATTAGAATGGAGGGATCCTGAAGCTAACGATGAGAGGTGTAAGGCTGCTGAATCGGTAATGGAAGAGCTCCGGCCACACGATCAGCTAGAGAAGCTTTGGATAGATGGCTATAAAGGTGAGAAGTTTCCCAATTGGATGCATGGCTATAACGATGGGTTGTTTTCAAAGCTCGTTCACATTGTTTTATTTAGTTGTGAACGATGCCAAATTCTGCCACCCTTTGCTCAACTCCCTGCTCTCAAGTTTATGTGGCTTAGTGGTCTAGAAGAGGTGGAATACGTGACAGACTGTTCATCGGCAACACCCCCATTCTTCCCGTCTCTTCAAATGCTCAAACTCGATAATTTGCCTAAATTGAAGGGGTTGCGGAAGAAAGGCTCATCATCAGAGGAAGATCCTTCATTTCCTCTTCTTTCAAAGCTAGATGTTGGTTTTTGCCATAAATTGACATCATTGACACTGCATTCATCTCCTTCCCTTTCAGAGGCATCATTGACACTGCATCATTGTCTTAATCTGAAATCATTGACACTGCCTTCATCCCCTTGCCTTTTGGAATTATCTATCAATACTTGCTGCAACTTGGAATCATTGGAACTACCTTCATCGGGTCTTTCTAAATTATATATCACTGAATGTAATGATTTGAAATCCTTGAATCTGCATTCATCTCCTGATCTTTCTCAATTAACTATACGGGACTGCAATAACCTGACATCCTTGGCACAACCTCCATCTCGTTATCTTTCTCAATTAGAGATCAGAGATTGCCCTAACTTGACATCCTTTGAACTGCATTCAGCTCCTGAGCTTTCTAGTTTAGAGATCAGAGATTGCCCTAAGTTGACTTCCTTGGAAGTGCCTTTATTACCTGGTCTTGAGAAACTGCATTTGAATACACTCAACAAGGAGGTATTACATCAGTTTACGTTTGTCTCTGCTTCTCGACATACATGA 2301 0.385 MGVQDVETLDGLKDVLYEKISQKKYLLVLDDVWNENPRKWYAVKKLLMVGARGSKIIVTTRKLYVASIMGDKSPVSLKGLGEKESWALFSKLAFGEQEILEPEIVEIGEEIAKMCKGVPLVIKSLATILQSKREPGQWLSIRNNKNLLSLGDENENVLGVLKLSYDNLPTHLKQCFTYCALFPKDYEIEKKSLLKTARTNHFTNTLMYKMHNLMHDLAQLIVKPEILVLRSGDNNIPKEARHVLLFEEVNPIINASQKISLRTFFMVNEDGFEDDSKDDSIINTSSKCLRVLSLNKFNIKKVPKFVGKLSHLRYLDLSNNDFKVLPSAIARLKHLQTLKVIDCVNLKELPKDTRELVHLRHLENDGCANLTHMPCGIGELTSLQSLPIFVVGNRRGYSRDRKIGGLNELEKLDYLRGQLRIKNLENVWNAEESSEAKLAKKQHIRSLRLEWRDPEANDERCKAAESVMEELRPHDQLEKLWIDGYKGEKFPNWMHGYNDGLFSKLVHIVLFSCERCQILPPFAQLPALKFMWLSGLEEVEYVTDCSSATPPFFPSLQMLKLDNLPKLKGLRKKGSSSEEDPSFPLLSKLDVGFCHKLTSLTLHSSPSLSEASLTLHHCLNLKSLTLPSSPCLLELSINTCCNLESLELPSSGLSKLYITECNDLKSLNLHSSPDLSQLTIRDCNNLTSLAQPPSRYLSQLEIRDCPNLTSFELHSAPELSSLEIRDCPKLTSLEVPLLPGLEKLHLNTLNKEVLHQFTFVSASRHT* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1239 766 SUPERFAMILY L domain-like 586 749 - -
Vvi19g1239 766 Gene3D Ribonuclease Inhibitor 268 589 IPR032675 -
Vvi19g1239 766 Gene3D - 165 218 IPR036388 -
Vvi19g1239 766 PANTHER DISEASE RESISTANCE PROTEIN RP 14 561 IPR044974 GO:0006952
Vvi19g1239 766 Pfam Leucine rich repeat 289 339 IPR001611 GO:0005515
Vvi19g1239 766 SUPERFAMILY L domain-like 209 630 - -
Vvi19g1239 766 ProSiteProfiles Leucine-rich repeat profile. 311 333 IPR001611 GO:0005515
Vvi19g1239 766 Gene3D - 2 74 IPR027417 -
Vvi19g1239 766 Gene3D - 79 164 IPR042197 -
Vvi19g1239 766 Pfam NB-ARC domain 9 167 IPR002182 GO:0043531
Vvi19g1239 766 PRINTS Disease resistance protein signature 307 323 - -
Vvi19g1239 766 PRINTS Disease resistance protein signature 115 129 - -
Vvi19g1239 766 PRINTS Disease resistance protein signature 19 33 - -
Vvi19g1239 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 179 IPR027417 -
Vvi19g1239 766 Gene3D Ribonuclease Inhibitor 590 764 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1239 Vvi-Chr19 20606618 20609026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1239 280 413 Receptor kinase-like Gene Family AT3G28890 35.556 3.29e-09 58.5