Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1220 ATGGATGCTACCATGGATGATGAACAAGTTGTGCTTCCAGGGTTTCGGTTTCATCCCACAGATGAAGAACTCGTTTCATTTTATCTTCGGAGAAAGATAGAGAAAAAGCCCATCAGTTTTGAACTCATCAAACAGACGGATATCTACAAATACGATCCCTGGGATCTTCCAAAGAATAGTAGTGTTACAGACAAGGAGTGGTACTTCTTTTGCAAAAGAGGGAGAAAGTATAGGAATAGCATACGACCCAATAGAGTTACGGGGTCCGGATTTTGGAAAGCAACAGGCATAGACAAGCCGATATATTCTGTTCAAGGACGAGCACATGATTGCATTGGACTCAAGAAATCATTAGTATACTACCGTGGAAGTGCAGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCTGCAGACCAGAAAAATACTACTCCTCACAGTGCCACGGCTGCTGATGAAGAAGTTGAAATATGGACGCTTTGTCGGATTTTTAAGCGAAATGTGTCATACAGAAAGTCGACACCAGATTGGAGAGAAACATCTGCAAAACGCAAGCCAACAAATTCAAGGCCTAAAACAGGCAATATGGATTCAGAAAATTGGGAAGGTTACATAAGTTTTGGAGCTCCGGAGGCTCTTGATAACGAGAAGAAGCTTTTTGTTGGTCACAATATGAATGAAAGAAACCAGTTCCATGTGGTTTCAGAGCCAGAGTCATGCTCAAGTGTTTTGAGTGATGAGGCTAGGGAGTTCTTAGTACATGGCAACTGGGATGAGATTGTCCCAGCCATGGACTGTGCTTTTGATCCTTATTATTTTTAA 834 0.4209 MDATMDDEQVVLPGFRFHPTDEELVSFYLRRKIEKKPISFELIKQTDIYKYDPWDLPKNSSVTDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVQGRAHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPADQKNTTPHSATAADEEVEIWTLCRIFKRNVSYRKSTPDWRETSAKRKPTNSRPKTGNMDSENWEGYISFGAPEALDNEKKLFVGHNMNERNQFHVVSEPESCSSVLSDEAREFLVHGNWDEIVPAMDCAFDPYYF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1220 277 ProSiteProfiles NAC domain profile. 11 170 IPR003441 GO:0003677|GO:0006355
Vvi19g1220 277 SUPERFAMILY NAC domain 7 170 IPR036093 GO:0003677|GO:0006355
Vvi19g1220 277 MobiDBLite consensus disorder prediction 179 201 - -
Vvi19g1220 277 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 220 - -
Vvi19g1220 277 FunFam NAC domain-containing protein 35 20 173 - -
Vvi19g1220 277 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
Vvi19g1220 277 Gene3D NAC domain 20 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1220 Vvi-Chr19 20230675 20232220 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1220 1 179 NAC Transcription Factor Family AT5G39820 56.373 8.46e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g1220 NAM 1.4e-36 No_clan