Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1211 ATGGCATTAGTTTCACGTCAAAGCAAAAAGTGGGGCCCAGGCTGTAGAGCTTTTAGCACTCAGGCTGCAACAACTGCAAGTGCTTCACAGCCTCCACCACCTCCTCCACCTCCAGAGAAAACCCATTTTGGTGGCCTGAAAGATGAGGACCGCATCTTCACCAATCTTTATGGGTTGCATGACCCATTTCTTAAAGGTGCCATGAAAAGGGGCGACTGGTACAGGACCAAAGACATAGTACTCAAGGGTTCTGATTGGATTGTAAATGAAATGAAGAAATCTGGTCTCCGTGGACGTGGTGGTGCCGGTTTTCCATCTGGCCTCAAATGGTCCTTCATGCCAAAAGTATCTGATGGCCGTCCTTCCTATCTTGTTGTCAATGCTGATGAAAGTGAACCTGGAACATGTAAAGACAGAGAAATAATGCGGCATGATCCACACAAACTATTAGAGGGCTGCTTGATTGCTGGGGTTGGAATGAGGGCTACTACCGCTTACATCTACATAAGGGGTGAATATGTGAATGAACGTAAAAACCTTGAAAGGGCCAGGAAAGAAGCTTATGAAGCTGGATTACTGGGCAAGAATGCATGTGGATCTGGTTATGATTTTGATGTCCATATCCATTATGGTGCTGGTGCTTATATTTGTGGTGAGGAAACAGCACTTTTGGAGAGTCTTGAAGGGAAACAAGGGAAGCCGAGATTGAAGCCTCCCTTCCCAGCTAATGCAGGATTATATGGTTGTCCCACCACTGTTACAAATGTGGAAACTGTGGCTGTTTCACCCACCATCTTAAGGCGTGGACCAGAGTGGTTTGCTGGTTTTGGAAGGAAGAACAATGCTGGGACAAAATTGTATTGTGTTTCAGGTCATGTGAACAAACCTTGCACTGTTGAAGAGGAGATGAGTATACCATTAAAGGAACTGATAGAGAGGCACTGTGGAGGTGTTAGAGGTGGATGGGACAATTTACTTGCAGTAATACCTGGGGGTTCATCCGTTCCTCTCCTTCCCAAGCACATATGTGATGATGTCCTGATGGATTATGATGCACTCAAGGCTGTCCAGTCGGGGTTGGGGACTGCAGCTGTGATCGTGATGGATAAGTCTACTGATGTCGTGGATGCAATTGCAAGGCTGTCTTACTTTTACAAGCATGAGAGCTGTGGACAGTGTACACCATGCAGGGAGGGAACAGGTTGGCTATTGATGATGATGGAAAGATTGAAAGTTGGGAATGCAAACTTGGAGGAGATTGACATGCTTCAGGAAGTGACAAAGCAGATTGAAGGGCACACAATCTGTGCATTGGGTGATGCAGCTGCTTGGCCTGTTCAGGGTCTTATCAGGCATTTTAGACCAGAACTTGAGAGAAGGATCAGGGAGCGTGCGGAGAGGGAGTTGCTGGAAGTGGCCGCTGCTTAA 1428 0.4678 MALVSRQSKKWGPGCRAFSTQAATTASASQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATTAYIYIRGEYVNERKNLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNAGTKLYCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLLMMMERLKVGNANLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRERAERELLEVAAA* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1211 475 SUPERFAMILY Nqo1 FMN-binding domain-like 49 284 IPR037225 -
Vvi19g1211 475 Pfam NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 377 459 IPR019575 GO:0051539
Vvi19g1211 475 Gene3D - 96 275 IPR037225 -
Vvi19g1211 475 SMART NADH_4Fe_4S_2 375 420 IPR019575 GO:0051539
Vvi19g1211 475 Coils Coil 170 190 - -
Vvi19g1211 475 FunFam NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial 276 372 - -
Vvi19g1211 475 SUPERFAMILY Nqo1C-terminal domain-like 371 464 IPR037207 -
Vvi19g1211 475 Gene3D - 373 468 IPR037207 -
Vvi19g1211 475 SUPERFAMILY Nqo1 middle domain-like 285 370 - -
Vvi19g1211 475 Pfam Respiratory-chain NADH dehydrogenase 51 Kd subunit 91 260 IPR011538 -
Vvi19g1211 475 FunFam NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial 96 275 - -
Vvi19g1211 475 Gene3D - 276 372 - -
Vvi19g1211 475 MobiDBLite consensus disorder prediction 1 45 - -
Vvi19g1211 475 FunFam Mitochondrial NADH dehydrogenase flavoprotein 1 373 468 - -
Vvi19g1211 475 ProSitePatterns Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 388 399 IPR001949 GO:0008137|GO:0010181|GO:0051539
Vvi19g1211 475 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 33 469 - -
Vvi19g1211 475 NCBIfam NADH-quinone oxidoreductase subunit NuoF 52 461 IPR011537 GO:0010181|GO:0051287|GO:0051539
Vvi19g1211 475 ProSitePatterns Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 211 226 IPR001949 GO:0008137|GO:0010181|GO:0051539
Vvi19g1211 475 Pfam SLBB domain 287 336 IPR019554 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1211 Vvi-Chr19 20058633 20060060 Dispersed