Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1208 ATGGCTGTTGAAGCTCGCCGTATCAATCTCTTTCCTTCTCAATTCATACCAAACAAAAGACAAGTGATGGGCTCTCTGGATGGAAACGGCGTCGTTTACGGAAGCCAGGTTGGGCAGAGAGGTCTGGTTTCCGAGAATTTGATGGTTCCTTTTTACAGTTCAGCCTTCGTCGATCCGGCTCCGGCCAAGGCAGACAGTGGCCTCACGTATAATCTTCCGGTTGCGAGGAAGCGGGCGAGGGATGAGTCCGTGATGATGTCCTTCCCCGGAAACTTCTCCTTTCTCGGCCAGGACATTTCTCTGCAGATCCAACAGCAGCAGTTGGAGATTGACCGATTCATTTCTCAACATATGGAGAGGGTGAGGTTGGAGATAGAAGAGCGGAGAAAAAGACATTCGAGGCGAATAATAGCGGCGGTGGAGGAGGCTCTGATGAAGAGACTGAAGGCCAAAGAGGAGGAAATCGAGAACATCGGGAAATTGAATTGGGCACTGGAGGAGAGGGTGAAATCGCTGTGCGAGGAGAACCAGATATGGCGAGACTTGGCGCAGACCAACGAAGCCAACGCCAATGCTCTGAGGAACAATCTGGAGCAAGTTCTGAGCCAGGTGAAGACGGAGCAGCGGCAGAGCCGGATCAGCCCCTGCCCAGAGTACATAGAAATGGAGTGGGCGGAGGAAGCAGAGTCGTGCTGCGGGAGCACAAGCGGCGGCGACGGTGATTGCGACAGAGAAAATGAAGAGAAAGAGAGTAGAGAAATGGATGACAGGAACATGAGATGGTGCAGAAACTGCCGGAAGGAGGAGGCGTCGGTGTTACTGCTGCCGTGTAGGCACCTCTGTCTGTGTACAATCTGTGGCTCCACCCTCCACACTTGCCCCATCTGTAAATCTAACAAGAATGCCAGTGTGCATGTTAACCTCTCTTAG 930 0.5258 MAVEARRINLFPSQFIPNKRQVMGSLDGNGVVYGSQVGQRGLVSENLMVPFYSSAFVDPAPAKADSGLTYNLPVARKRARDESVMMSFPGNFSFLGQDISLQIQQQQLEIDRFISQHMERVRLEIEERRKRHSRRIIAAVEEALMKRLKAKEEEIENIGKLNWALEERVKSLCEENQIWRDLAQTNEANANALRNNLEQVLSQVKTEQRQSRISPCPEYIEMEWAEEAESCCGSTSGGDGDCDRENEEKESREMDDRNMRWCRNCRKEEASVLLLPCRHLCLCTICGSTLHTCPICKSNKNASVHVNLS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1208 309 Coils Coil 183 210 - -
Vvi19g1208 309 ProSiteProfiles Zinc finger RING-type profile. 262 297 IPR001841 -
Vvi19g1208 309 Pfam Zinc finger, C3HC4 type (RING finger) 261 299 - -
Vvi19g1208 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 308 IPR013083 -
Vvi19g1208 309 FunFam BOI-related E3 ubiquitin-protein ligase 1 239 309 - -
Vvi19g1208 309 CDD mRING-HC-C3HC5_CGRF1-like 262 297 - -
Vvi19g1208 309 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 64 306 IPR017066 -
Vvi19g1208 309 MobiDBLite consensus disorder prediction 231 250 - -
Vvi19g1208 309 Coils Coil 141 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1208 Vvi-Chr19 19949346 19950460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1208 119 298 Miscellaneous Gene Families AT4G39050 26.633 7.27e-08 52.0