Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1206 ATGGTGAAGTTCCTCAAACCCAATAAGGGCCGCTTCGCCGGCCGTAAGGCCGTGATCGTGCGCTCATTCGACGATGGTACACGTGACCGCCCCTATGGCCACTGCCTCGTTGCCGGCATCGCCAAGTACCCAAAGAAGGTGATCCGCAAGGACTCGGCTAAGAAGACAGCGAAGAAGTCGAGAGTCAAGGCCTTCATCAAGCTTGTCAACTACAACCACATCATGCCCACTCGCTATACTCTCGATGTAGACCTCAAGGACGTTGTCTCTCCCGATGTGCTGCAGTCAAGGGATAAGAAGGTGACGGCTGCCAAGGAGACTAAGAAGAAGCTCGAGGAGCGGTTCAAGACTGGCAAGAACAGGTGGTTCTTTTCCAAGCTCAGGTTCTAA 390 0.5385 MVKFLKPNKGRFAGRKAVIVRSFDDGTRDRPYGHCLVAGIAKYPKKVIRKDSAKKTAKKSRVKAFIKLVNYNHIMPTRYTLDVDLKDVVSPDVLQSRDKKVTAAKETKKKLEERFKTGKNRWFFSKLRF* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1206 129 CDD KOW_RPL27 9 82 IPR041991 -
Vvi19g1206 129 Coils Coil 94 121 - -
Vvi19g1206 129 SUPERFAMILY Translation proteins SH3-like domain 7 129 IPR008991 -
Vvi19g1206 129 Gene3D - 1 129 IPR038655 -
Vvi19g1206 129 PANTHER 60S RIBOSOMAL PROTEIN L27 1 129 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vvi19g1206 129 ProSitePatterns Ribosomal protein L27e signature. 118 129 IPR018262 GO:0003735|GO:0005840|GO:0006412
Vvi19g1206 129 Pfam Ribosomal L27e protein family 46 129 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vvi19g1206 129 FunFam 60S ribosomal protein L27 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1206 Vvi-Chr19 19906370 19906777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1206 1 129 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 77.778 4.74e-73 212