Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1193 ATGGCCAAGCCAGGCCGAGGTCGCCCATCTCCACCATCTGGCTCCGCTTCGGGTTCCTCCTCTCGCTCCCGCTCCCGCTCCTACTCCGGCTCTGATTCTCGCTCCTCCTCTCGATCTCGCTCTCCTTCCCGCTCAAGATCCTTCTCTTCATCTTCGTCTCAGTCGCGCAGTGTCAGCTCTCGCAGTCGAAGCGTTTCTCCTAAGAGAAAAAGTCCTGAAGTAGCTAAGCGAGGTCGCTCCCCACCACCACAATCTAAAAGAACTTCTCCTCCTCCAAGGAAAGTTTCTCCCATTCGCGAATCTCTTGTTCTTCACATTGGTTCACTCTCCAGGAATGTGAATGAAGGCCATCTAAAAGAGATATTTAGTAACTTTGGTGAAGTTGTACATGTAGAGCTGGCAATGGATCGCACTGTTAATCTTCCAAAAGGATATGGATATGTTGAATTCAAGACAAGATCTGATGCTGAAAAAGCTCAATTATACATGGATGGTGCTCAAATTGATGGGAATGTTGTTAGAGCAAAGTTCACATTGCCTCAGAGGCAGAAGATTTCATCACCCCCAAAGGCTGTTGCTACTGCTTCAAAGAGAGATGGCCCAAAAACTGATAATGTTGGTGCAGATGTTGAAAAGGATGGACCAAAGCGGCAGAGAGAAGCTTCTCCCCGTCGGAAACCTCCTTCTCCACCACGAAGGAGATCCCCTGCTCCAGGTCGACGAGGTGGATCTCCAAGACGACAGTTAGATTCACCTCAGCGTCGTCGTGGAGAGAGTCCCATTCGACACCGAGTAGAATCTCCTTATCGCCGGGGTGAAACACCTCCTAGGAGGAGACCTGCATCTCCATCCAGAGGTCGTTCTCCACTTTCTCCACCAAGGCGGCATAGATCACCTGCAAGGGCCTCTCCCCGAAGGATGCGTGGCAGTCCTGTCCGCAGGCGATCTCCACCTCCTCCAAGGCGCCGCTCACCTCCCAGACGAGCTAGGAGTCCACCTATGCCTAGAAGGTCTCCAGTCAATCGCAGACGGAGCCGCTCCCCCCCTGTTCGTAGGCCTGTTCGTTCACGTTCAAGGTCAATCTCCCCACGGAGAGGACGAGCACTAGCTGCCAGACATAGGAGGTCGTCATCCTACTCTGGATCGCCTAGTCCACGCAAGGCTGTTCGGAAGATGTCAAGGAGTGGCAGTCCTAGAAGGCCTCTGAGAGGAAAAAGCAGTAGCAACAGCAGCAGCAGCGGTACCCCTCCACGGAAGCCATAA 1263 0.5297 MAKPGRGRPSPPSGSASGSSSRSRSRSYSGSDSRSSSRSRSPSRSRSFSSSSSQSRSVSSRSRSVSPKRKSPEVAKRGRSPPPQSKRTSPPPRKVSPIRESLVLHIGSLSRNVNEGHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRSDAEKAQLYMDGAQIDGNVVRAKFTLPQRQKISSPPKAVATASKRDGPKTDNVGADVEKDGPKRQREASPRRKPPSPPRRRSPAPGRRGGSPRRQLDSPQRRRGESPIRHRVESPYRRGETPPRRRPASPSRGRSPLSPPRRHRSPARASPRRMRGSPVRRRSPPPPRRRSPPRRARSPPMPRRSPVNRRRSRSPPVRRPVRSRSRSISPRRGRALAARHRRSSSYSGSPSPRKAVRKMSRSGSPRRPLRGKSSSNSSSSGTPPRKP* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1193 420 MobiDBLite consensus disorder prediction 179 420 - -
Vvi19g1193 420 MobiDBLite consensus disorder prediction 337 372 - -
Vvi19g1193 420 CDD RRM_RNPS1 104 175 IPR034201 -
Vvi19g1193 420 MobiDBLite consensus disorder prediction 1 98 - -
Vvi19g1193 420 Gene3D - 13 187 IPR012677 -
Vvi19g1193 420 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 270 391 - -
Vvi19g1193 420 MobiDBLite consensus disorder prediction 202 227 - -
Vvi19g1193 420 FunFam Serine/arginine-rich splicing factor SR45 3 187 - -
Vvi19g1193 420 MobiDBLite consensus disorder prediction 247 280 - -
Vvi19g1193 420 SUPERFAMILY RNA-binding domain, RBD 97 188 IPR035979 GO:0003676
Vvi19g1193 420 MobiDBLite consensus disorder prediction 290 330 - -
Vvi19g1193 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Vvi19g1193 420 MobiDBLite consensus disorder prediction 12 65 - -
Vvi19g1193 420 SMART rrm1_1 103 176 IPR000504 GO:0003723
Vvi19g1193 420 MobiDBLite consensus disorder prediction 400 420 - -
Vvi19g1193 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1193 Vvi-Chr19 19626907 19642830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1193 104 177 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 5.79e-09 56.2