Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1189 ATGAGTGAACAAAGATGTTCAAAAATGATGAGATTGTGTTGTGAGCCCATTGTCAAAGCCATAATTTGTGGACTGAAGGGGTGTGGCTTGTCAGGTAGACAGATTGCTAAAGACCGGATTTCTTTGTTAGTGGAGGCAGGTCATTTGGCTCTGATTACTCGTTGGGCAGGGGAGCATCACATTTATTTTTGGAAGCTAGGAATTGCCGGTGCCCTATCTACCCTTCTTCTACGCAAATCTCATAAAGCCCAACAACCTCCACATTCCTTGTCATTGGAAGAACTGACATTCATAACAGATGAGGGTAGTGCATTCATCTGGGAAATTATTGTGGGGCTTGTAACCCACTGTGGGGAAGATTTCAATCCTGAGATGAATGGCACTGACGTTTTCATCAGCATCCTTATTTATTGTGCATGCAAGACCTTTGTGGACTCAGTTGATCCGATTTTTGAAGAAGCTGCAAACAATATCAGCAGCTGTTTAGCATCTAGAGCACTTCTGATGATGATTTATTCTCCCTGCAAATACATTGCATCACAGGCCCAATCCAAATTGTCTAAGGCTCTAAAGGCAGAGGGAAAGCGTTATCTAAAATCCTTTACGGATTACCTATGCTATGTCTCATCCAGGGATGAGTATGGAAGACCAGATGAACGCACTTTCTTTAGCATAGTGGGATTGACATGTTATTCGGGTTTGCCGCAGTATCAAAAGTATGTTTTACAGAGTGAAGGAATAAAAACGCTGCTGGCCTTTATAAAGCAGTGCTTAAAAAATGATTCCCATTTGGGAAGGCTAAGTTTTGCCTCTAATTTGCAAAATATTTTCAGTAGCTGGACATGTTGCCAGACATGTGCAGAAGATTGGGATGGCGGAGACATTCTTATGCTTTTTGGTCTGTGGGGGCTAGCTGAATTGATCCACCATTCTGGTCGCATGAGAAATCACCCTGATTTATTTCGTGGCCAGATGGAATATACTGAAGTTCAATTCATTAAAAAACTCCAAGAGATCTGCAGTGATACTTCTATTCCTGGGCTAAGATGGTATGCTGCATACCTTCTTAGTTATTTTGGAGTGTATGGTTTTCCAAGTAGGATTGGTAATGCACTTGGTGAAAAGGAAAATGCAGATATGCAACTCATTCTTAAAAATGGAGAATCTGTGAGCATTCATGGTGTTGTTCTTATGGTCCAATGTCCATCATTACTGCAGACTGTTGAGCTGCCTCTTGATAAGGAAAGTTCTGATGGCTCTTCAGTTAGACAATATACAGAGTCGGCGAAAAAGTTCAAGAAAGAAGTTCATTTATCTTCTCGTTTACGTCATCAGCCATTAGTGAAGCTATTGGAATTTGTTTATTTGGGATATTTACAAGCAGGAGAAGACCTTGTGAAGTCATTGAAAAGTTTTGCTAAACATTGCAAACTGCAACCTCTACTACAAATGCTTCATAGAAATCGTCCAAAGTGGGGCATGCCTTTTCCTGGATTGGATCTTGCTCTTGCACTCGATTTTGATGGGCATACTTTTTCGGATGTTGCCTTGGAAGCTGAAGCAACTGAAGTGATGCAGTGGACATGCAAATTCTGCTCTGTTTTAGTGCCTCATATGCACGTCCACAAAGTCATATTGTGGTCAAGTTGTGATCATTTCCGGGCCATGTTCCGGTCAGGGATGCAAGAAAGCCGTTCCCCCTTCATAAAGGTCCCTGTTAGTTGGGAGGCATTGGTTAAACTAGTGGACTGGTTGTATTCTGATAAACTGCCAACACTCGTCACTGGCTGTTTATGGGATAACATGGATGAAAGGAAAAAGCTACAGGAGCTGCAACCGTACTTGGAGCTTTGTTGGCTTGCAGACTATTGGTTATTGGACGATATTCAAGAACACTGCTCAAGAGTGATCAACTCTTGCCTGGATTCTTCTGGAAACTTGTCTCTTGAAGTACTCCATATAGCTGCTAGGCTCTCCCTGTGGAAGTTGGCTGAGACTGCAGTAAATCGCTTAGCCCCTTCATATAGCCGTCTCTGCCTCACTGGTGAAATTGAAAAGCTGGATAAAGACCTTGCTGACATGGTTCATGCTGCCTCTGTTCGACATTCCCAGGATTCAACCAAATGCAAGTTAGAAGAGTAA 2142 0.4234 MSEQRCSKMMRLCCEPIVKAIICGLKGCGLSGRQIAKDRISLLVEAGHLALITRWAGEHHIYFWKLGIAGALSTLLLRKSHKAQQPPHSLSLEELTFITDEGSAFIWEIIVGLVTHCGEDFNPEMNGTDVFISILIYCACKTFVDSVDPIFEEAANNISSCLASRALLMMIYSPCKYIASQAQSKLSKALKAEGKRYLKSFTDYLCYVSSRDEYGRPDERTFFSIVGLTCYSGLPQYQKYVLQSEGIKTLLAFIKQCLKNDSHLGRLSFASNLQNIFSSWTCCQTCAEDWDGGDILMLFGLWGLAELIHHSGRMRNHPDLFRGQMEYTEVQFIKKLQEICSDTSIPGLRWYAAYLLSYFGVYGFPSRIGNALGEKENADMQLILKNGESVSIHGVVLMVQCPSLLQTVELPLDKESSDGSSVRQYTESAKKFKKEVHLSSRLRHQPLVKLLEFVYLGYLQAGEDLVKSLKSFAKHCKLQPLLQMLHRNRPKWGMPFPGLDLALALDFDGHTFSDVALEAEATEVMQWTCKFCSVLVPHMHVHKVILWSSCDHFRAMFRSGMQESRSPFIKVPVSWEALVKLVDWLYSDKLPTLVTGCLWDNMDERKKLQELQPYLELCWLADYWLLDDIQEHCSRVINSCLDSSGNLSLEVLHIAARLSLWKLAETAVNRLAPSYSRLCLTGEIEKLDKDLADMVHAASVRHSQDSTKCKLEE* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1189 713 Pfam BTB/POZ domain 538 638 IPR000210 GO:0005515
Vvi19g1189 713 CDD BTB_POZ_ZBTB_KLHL-like 512 590 - -
Vvi19g1189 713 SMART BTB_4 378 493 IPR000210 GO:0005515
Vvi19g1189 713 SMART BTB_4 530 641 IPR000210 GO:0005515
Vvi19g1189 713 Gene3D Potassium Channel Kv1.1; Chain A 363 488 IPR011333 -
Vvi19g1189 713 ProSiteProfiles BTB domain profile. 513 590 IPR000210 GO:0005515
Vvi19g1189 713 SUPERFAMILY POZ domain 538 637 IPR011333 -
Vvi19g1189 713 Gene3D Potassium Channel Kv1.1; Chain A 500 672 IPR011333 -
Vvi19g1189 713 PANTHER OS06G0674800 PROTEIN 2 705 IPR044953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1189 Vvi-Chr19 19593143 19596889 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi19g1189 BTB 3.5e-08 CL0033