Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1188 ATGATTAAGGCATTGGAAGGAATTCTTCAATGCAACAGTGAAGCTGTATTAATCATTGCAGCAAAGGTTGCATTGAAGTTAGTCCGGGACTTGCCCAGTTCAATGCTGCAATCTCATGTGTTACATCTTATTCAGCCTTTTTCATCTTTATTATCATCTCATCAAGTAAAAGTTGCTTCCCGGTGTGCAAATGGTTTGAATCATATCCTACCATATCTGAGTTTAAAGAAGGATGGAGTTATTTGGGAGATATTGAAAGAAACAAATGCAGTTATTCATGTTATCAATAATATACAAAAATTTTCCAGAGGAATGGAATCAATTAAATATTTCCAACGGATGGCTTCTCTTCTAAGGAGGATATTGTGGCAGTGGCCGCCCTCTCGCTATCGTGTATGGAATGATGCTGAGTTGTTGAGGGTTTTGGAGGTTATACGTGTAAATCCTGATTCTTCTGTTAAAGTTGCAGTTTTGCAATTGTATTCTGCTTTAGCTTTATGTGGTAATGGGGCTGAGAGGCTTCTAGAAAATGGAGAAAACCTTCTAAAAATGGTGGTGCAGTGCATGGACAGCACACAACCTCCTTCTGTTCGGATAGAGGCATTTAAACTCGCTCGGTTGTTGGCGATGAGTGGACAAAGGTGTTCAAAAATGATGAGATTGTGTTGTGAGCCCATTGTCCAAGCCATAATTTGTGGACTGAGGGGATGCAGCTTGTCAGATAGACAGATTGCTAAAGACCAGATTTCTTTGTTAGTGGAGGCAGGTCATTTGGCTCTGATTACTCGTTGGGCAGGGGAGCATCACATTTATTTTTGGAAGCTAGGAATTGACAGAGTTCTATCTACCCTTCTTCTAAGCAAATCTCATAAAGCTCAACCGCCTCAACATTCCTTGTCATTGAAAGAACTGAGAGCCATAACAGATGAGGGTCCTGCATTCATCTGGGATATTATTGGTGGGCTTGTAACCCACTGTGGGGAAGATTTCAATCCTGAGATGAATGGCAGTGACGTTTTCATCGGCATCCTTATTGGTTGTGCATGCTTGACCTTTGTGGACTCGGTTCATCAAAGTAGTCAGATTTATCAAGATGCTGCCAACAATATCAGTGGCCGTTCAGCATCTAGAGCAGTTCTGATGATGATTTATTCTCCCTGCAAATACATTGCATCACAGGCCCGATCCAAATTGTCTGAGGCTCTAAAGCCAGAAGGAAAGCGTTATCTAAAATCCTTGATGGATTACCTATGCTATGTCTCATCCAGGGATGAGTTTGGAAGACCAGATGAACGCACTTTCTTTAGCATAGTGGGATTGACGTGTTATTCGGGTTTGCCACAGTATCGAAAGTATGTTTTACAGAGTGAAGGGATAAAAATGCTGCTGGCCTTTATAAAGCAGTGCTTAAAAAATGATTTCCATTTGGGAAGGCTAAGTTTTGCCTCTAATTCACAAAATATGTTCAGTAGCTGGACATGTTGCCAGACATGTGCAGAAGATTGGGATGGCGGAGGCATTCTTGTGCTTTTTGGTCTGTGGGGACTAGCTGAATTGATCCACAATTCTGGTCCCATGAGAAATCACCCTGATTTATTTTGTGGTCAGATGGAATATACTGAAGCTCAATTCATTAATAAACTCCAAGAGATCTGCAGTGATACTTCTATTCCTGGGCTAAGATGGTATGCTGCATACCTTCTTAGTTATTTTGGAGTGTATGGTTTTCCAAGTAGACTTGGAAAAAGGATTGGGAACGCATTTGGTGAAAAGGAAAATGCAGATATGCAACTCATTCTTAAAAATGGAGAATCTTTGAGCATTCATGGTGTTGTTCTTATGGTCCAATGTCCATCATTGCTGCAGACTGTGGAGCTGCCTCTTGATAAGGGAAGTTCTGATGGTTCTCCAGTTAGACAATATACAGAGTTGACGAAAAAGTTCAAGAAAGAAGTTCATTTATCTTCTCATGTACATCACCTGCCATTAGTGAAGCTATTGGAATTTGTTTACTTGGGATATTTACAAGCAGGAGAAGACCTTTTGAAGTCATTGAAAAGTTTTGCTAAACATTGCAAACTGCAACCTCTACTACAAATGCTTCATAGAAATCGTCCAAAGTGGGGCATGGCTTTTCCTGGATTGGATCTTGCTCTTGCACTCAATTCTGATGGGCATACTTTTTCGGATGTTGCCTTGGAAGCTGAAGCAACTGAAGTGATGCAGTGGACATGCAAATTCTGCCCTGTTTTAGTGCCTCATATGCATGTCCACAAAGTCATATTGTGGTCAAGTTGTGATTATTTCCGGGCCATGTTCCGGTCAGGGATGCAGGAGAGCCGTTCCCCCTTCATAAAGGTCCCTGTTAGTTGGGAGGCATTGGTTAAACTAGTGGACTGGTTGTATTCTGATAAACTGCCAACACTCGTCACTGGCTGTTTATGGGATAACATGGATGAAAGGAAAAAGCTACAGGAGCTGCAACCGTACTTGGAGCTTTGTTGGCTTGCAGACTATTGGTTATTGGACAATATTCAGGAACACTGCTCAAGAGTGATCAACTCTTGCCTGGATTCTTCTGGAAACTTGTCTCTTGAAGTACTCCAGATAGCTGCTAGGCTCTCCCTGTGGAAGTTGGCTGAGACTGCAGTAAATCGCTTAGGCCCTTCTTATAGCCGTCTCCGCCTCACTGGTGAAATTGAAAAGCTGGATAAAGACCTTGCTGACATGGTTCGTGTTGCCTCTGTTCGACATTCCCAGGATTCAACCAAATGCAAGTTAGAAGAGTAA 2790 0.4194 MIKALEGILQCNSEAVLIIAAKVALKLVRDLPSSMLQSHVLHLIQPFSSLLSSHQVKVASRCANGLNHILPYLSLKKDGVIWEILKETNAVIHVINNIQKFSRGMESIKYFQRMASLLRRILWQWPPSRYRVWNDAELLRVLEVIRVNPDSSVKVAVLQLYSALALCGNGAERLLENGENLLKMVVQCMDSTQPPSVRIEAFKLARLLAMSGQRCSKMMRLCCEPIVQAIICGLRGCSLSDRQIAKDQISLLVEAGHLALITRWAGEHHIYFWKLGIDRVLSTLLLSKSHKAQPPQHSLSLKELRAITDEGPAFIWDIIGGLVTHCGEDFNPEMNGSDVFIGILIGCACLTFVDSVHQSSQIYQDAANNISGRSASRAVLMMIYSPCKYIASQARSKLSEALKPEGKRYLKSLMDYLCYVSSRDEFGRPDERTFFSIVGLTCYSGLPQYRKYVLQSEGIKMLLAFIKQCLKNDFHLGRLSFASNSQNMFSSWTCCQTCAEDWDGGGILVLFGLWGLAELIHNSGPMRNHPDLFCGQMEYTEAQFINKLQEICSDTSIPGLRWYAAYLLSYFGVYGFPSRLGKRIGNAFGEKENADMQLILKNGESLSIHGVVLMVQCPSLLQTVELPLDKGSSDGSPVRQYTELTKKFKKEVHLSSHVHHLPLVKLLEFVYLGYLQAGEDLLKSLKSFAKHCKLQPLLQMLHRNRPKWGMAFPGLDLALALNSDGHTFSDVALEAEATEVMQWTCKFCPVLVPHMHVHKVILWSSCDYFRAMFRSGMQESRSPFIKVPVSWEALVKLVDWLYSDKLPTLVTGCLWDNMDERKKLQELQPYLELCWLADYWLLDNIQEHCSRVINSCLDSSGNLSLEVLQIAARLSLWKLAETAVNRLGPSYSRLRLTGEIEKLDKDLADMVRVASVRHSQDSTKCKLEE* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1188 929 CDD BTB_POZ_ZBTB_KLHL-like 728 806 - -
Vvi19g1188 929 Gene3D Potassium Channel Kv1.1; Chain A 715 887 IPR011333 -
Vvi19g1188 929 SUPERFAMILY POZ domain 754 853 IPR011333 -
Vvi19g1188 929 Gene3D Potassium Channel Kv1.1; Chain A 576 704 IPR011333 -
Vvi19g1188 929 PANTHER OS06G0674800 PROTEIN 1 921 IPR044953 -
Vvi19g1188 929 Pfam BTB/POZ domain 754 854 IPR000210 GO:0005515
Vvi19g1188 929 Gene3D - 1 262 IPR011989 -
Vvi19g1188 929 SMART BTB_4 729 857 IPR000210 GO:0005515
Vvi19g1188 929 SMART BTB_4 594 709 IPR000210 GO:0005515
Vvi19g1188 929 SUPERFAMILY ARM repeat 3 572 IPR016024 -
Vvi19g1188 929 ProSiteProfiles BTB domain profile. 729 806 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1188 Vvi-Chr19 19553944 19558826 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi19g1188 BTB 2.6e-09 CL0033