Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1183 ATGGCGAGAACAGCATGCCACACTCTCCTTCCAACTTTGGCCTTCCCGTTCAAATCTTCTTTCTTCACAAAATCTCCAATCCTCTGTCCTTCACAGTCTCTGTTCTTCCATGCCTTTCCCAAGCCTTTTTCCTCTTCTTCTTCGGCCAAGATAAGCATGAGCTTGAAGGCTGGCATCGTCGGACTCCCTAACGTTGGCAAATCCACTCTCTTCAACGCCGTTGTTGAAAATGGGAAGGCTCAAGCTGCGAATTTCCCCTTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATCCACGCCTCCATGTACTTTCTGATATCAGCAAATCTCAACGAGTAGTTCCAGCATCTATAGAATTTGTAGATATTGCTGGGCTTGTAAAGGGAGCCAGTCAAGGGGAGGGTTTGGGTAATAAGTTCTTATCACATATTCGGGAAGTGGACTCCATACTTCAGGTTGTACGCTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAAGTTGATCCAAAGTCTGATATCGATGTCATCAACTTAGAGCTAGTTTTCTCAGATTTAGATCAGATAGAGAAAAGAATGGAGAAGCTGAAAAAAGGCAAAGCAAAGGATTCACAATCTAAACTGAAGGAGGAAGCGGAGAAATCAGCCCTGGAAAGAATTCGGGAAGCACTTATGGATGGAAAACCAGCACGATCAGTAACTTTAACCGATTTTGAGAAAGATGCTATAAAGCATCTTTGTTTGCTTACAATGAAACCAATCATATATGTGGCTAATGTTGCAGAATCTGACTTAGCTGAGCCTGGAAGTAATCCCTATGTTAAAGAAGTGATGAACCTTGCATCTGAGTTGCAATCTGGAATTGTAACAATCTCAGCACAGGTTGAGTCAGAACTTACTGAACTTCCATCTGAAGAAAGAACAGAATTTCTGAAATCCCTTGGTGTCAGTGAAAGTGGCCTTGGAAACCTTATTAGAGCAACATATAGCCTTTTGGGGCTGCGTACATACTTTACTTCTGGTGAAAAGGAAACAAAAGCATGGACCATACTTGCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATTCACTCAGACTTTGAGAAGGGTTTCATACGAGCTGAGACGGTGGCTTATGATGATTTTGTTGCTGCTGGTTCACTTGCAGCTGCTAGGGAAAAAGGACTTTTGAGATCCGAGGGAAAAGATTACATTGTACAAGAAGGAGATGTAATGCTGTTTCGTTTCAATGTTTGA 1269 0.4247 MARTACHTLLPTLAFPFKSSFFTKSPILCPSQSLFFHAFPKPFSSSSSAKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSDISKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEEAEKSALERIREALMDGKPARSVTLTDFEKDAIKHLCLLTMKPIIYVANVAESDLAEPGSNPYVKEVMNLASELQSGIVTISAQVESELTELPSEERTEFLKSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1183 422 NCBIfam redox-regulated ATPase YchF 53 422 IPR004396 GO:0005524|GO:0005525|GO:0016887
Vvi19g1183 422 SUPERFAMILY TGS-like 338 419 IPR012676 -
Vvi19g1183 422 CDD TGS_YchF_OLA1 336 420 IPR013029 -
Vvi19g1183 422 PRINTS GTP1/OBG GTP-binding protein family signature 79 97 IPR006073 GO:0005525
Vvi19g1183 422 PRINTS GTP1/OBG GTP-binding protein family signature 57 77 IPR006073 GO:0005525
Vvi19g1183 422 PRINTS GTP1/OBG GTP-binding protein family signature 123 138 IPR006073 GO:0005525
Vvi19g1183 422 PRINTS GTP1/OBG GTP-binding protein family signature 140 158 IPR006073 GO:0005525
Vvi19g1183 422 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 55 315 IPR031167 GO:0005525
Vvi19g1183 422 PANTHER OBG GTPASE FAMILY 47 421 - -
Vvi19g1183 422 CDD YchF 57 336 IPR041706 -
Vvi19g1183 422 Gene3D - 101 421 IPR012675 -
Vvi19g1183 422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 360 IPR027417 -
Vvi19g1183 422 Gene3D - 55 337 IPR027417 -
Vvi19g1183 422 FunFam Ribosome-binding ATPase YchF 325 421 - -
Vvi19g1183 422 Hamap Ribosome-binding ATPase YchF [ychF]. 54 422 IPR004396 GO:0005524|GO:0005525|GO:0016887
Vvi19g1183 422 Pfam 50S ribosome-binding GTPase 57 169 IPR006073 GO:0005525
Vvi19g1183 422 Pfam Protein of unknown function (DUF933) 338 421 IPR013029 -
Vvi19g1183 422 FunFam Ribosome-binding ATPase YchF 166 256 - -
Vvi19g1183 422 Gene3D - 166 256 IPR023192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1183 Vvi-Chr19 19485408 19493467 Dispersed