Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1178 ATGGCAGACGAGATTATCTTGTTGGATTTCTGGGCTAGCCATTTTGGAATGAGGGTCAGAATTGCCCTGGCAGAGAAGGGTCTCATGTATGAATATAGGGAGGAGAACTTGTGGAACAAAAGCCCTCTGCTTCTTGAGATGAACCCAGTTCACAAGAAAGTCCCTGTCCTGATCCACAACGGAAAACCCATTTGTGAGTCTCTCATGATTGTGCAGTATATCGATGAGGTTTGGAAGGATAAATCTCCATTGTTGCCAAGTGACCCTTACCAGAGAGCTCAGGCCAGGTTCTGGGCGGACTATGTAGACAAGAAGGTTCCACAGCTGTATCATGAGCTTGGAAAGAAGATATGGTACACCAAAGGAGAAGAGCATGAGGCAGGCAAGAAGGAATTCATAGAGTGCCTCAAGTTTTTTGAAGGAGAGCTTGGAGAGAAACCCTACTTTGGCGGTGAAAATTTTGGGTTTGAGGATGTGGCTCTAGTGCCCTTATCTTGCTGGTTTTATACATACGAGAGCTTTGGCAACTTCAGCGTGGAAGATGAGTGCCCCAATTTGATGGCTTGGGCCAAGAGGTGCGGGCAAAAGGAGAGCGTGTCGTCTTCTCTTGCAGACCCACACAAGGTCCATGGCTTTGTCATGGAGATGAGAAAGAGGCTCGGTATAGATTAG 672 0.4717 MADEIILLDFWASHFGMRVRIALAEKGLMYEYREENLWNKSPLLLEMNPVHKKVPVLIHNGKPICESLMIVQYIDEVWKDKSPLLPSDPYQRAQARFWADYVDKKVPQLYHELGKKIWYTKGEEHEAGKKEFIECLKFFEGELGEKPYFGGENFGFEDVALVPLSCWFYTYESFGNFSVEDECPNLMAWAKRCGQKESVSSSLADPHKVHGFVMEMRKRLGID* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1178 223 CDD GST_C_Tau 89 216 IPR045074 GO:0004364|GO:0006749
Vvi19g1178 223 SFLD Glutathione Transferase (cytosolic) 2 220 IPR040079 -
Vvi19g1178 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Vvi19g1178 223 Gene3D Glutaredoxin 1 87 - -
Vvi19g1178 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 220 IPR010987 -
Vvi19g1178 223 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Vvi19g1178 223 CDD GST_N_Tau 5 78 - -
Vvi19g1178 223 Gene3D - 88 223 - -
Vvi19g1178 223 FunFam Glutathione S-transferase U20 88 223 - -
Vvi19g1178 223 FunFam Tau class glutathione S-transferase 1 87 - -
Vvi19g1178 223 SUPERFAMILY Thioredoxin-like 5 105 IPR036249 -
Vvi19g1178 223 Pfam Glutathione S-transferase, C-terminal domain 121 193 IPR004046 -
Vvi19g1178 223 SUPERFAMILY GST C-terminal domain-like 76 220 IPR036282 -
Vvi19g1178 223 SFLD Main.3: Omega- and Tau-like 2 220 IPR045073 -
Vvi19g1178 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 208 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1178 Vvi-Chr19 19309633 19310536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1178 1 223 Glutathione S-transferase Gene Family AT1G17180 65.022 1.66e-109 311