Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi19g1177 | ATGGCAATCCTGGTGAATGCAATGTCTCCAATTACAAGCCCATCTCCAGAAAATGCGAGAAAGGTTTGTGGATTCTTTTCCCAGGTTCCTAATCTCCATACCCTTTCACTGAACAAGGGTTTTTCTAGGGTTTTGGCATCTACCCAGATCACCATTTCTCCTAAGGACAATGTTTTCACACTCCCCAATTGGAGGTCTGGAAAGAACGACCCAAGAACTAGAGACCTCAGGCTCAATGATGCTTTTTTGTATTTGGAGTATATGATAGGGAAGGGACACAAGCCCGATGGAGGACAAGCTACTCAGCTCATGTATGAGCTCTGCAAATCAAATAAGATGAGGAAAGCAACTAAGGTGATGGAGTTGATGATCGGTTCAGGTACCACTCCAGATCCTGCTTCTTGTACCTTCTTGGTGAATAATCTGTGTAAAAGAGGGAATGTTGGGTATGCAATGCAATTAGTTGAAAAAATGGAGGAATATGGATATCCAACCAATACTGTTACCTATAATTCTCTTGTTAGGGGGCTTTGTATGCATGGAAACTTGAGTCAGAGCTTGCAAATTTTGGATAAATTTATGAAGAAGGGGTTGGTTCCAAACGTGTTCACATACTCATTCTTGCTTGAAGCTGCGTATAAGGAGAGAGGGGCTGATGAAGCCATAAGGCTCTTGGATGAGATAGTTGCTAAGGGTGGGAAGCCTAATCTGGTTAGCTACAATGTTTTGTTAACTGGATTGTGCAAGGAAGGCAGAACAGAAGAGGCAATGCAGTTCTTTAGGGATTTGCCATCTAAGGGGTTCAGTCCGAATGTTGTGAGCTATAATATTTTGTTAAGGAGTTTGTGCTACGAGGGGCGATGGGAAAAGGCAAAGGAGCTTCTGGCTGAGATGGATGGCGGGGAACGTTCCCCATCCATAGTTACATTCAACATATTGATTGGTTCGCTTGCCCTTCATGGACAAACTGATCAGGCTCTTGAGGTTTTAGATGATATGTCGAGGGCACGGTTCAAGGCCACTGCTGCAAGCTACAACCCAATAATTGCTCGTCTTTGCAAAGAGGGGAAGGTGGATCTTGTGGTTAAGTGTCTTGACCAAATGATGTATCGACGCTGTAATCCTAATGAGGGTACATACAATGCAATTGCTGTGCTTTGTGAGGAGGGAAAGGTGCAAGAGGCATTTTCTATAATTCAGAGCTTAGGTAATAAACAAAATTCCTCCACGCACGACTTCTACAAAGGTGTTATCTCAAGCTTGTGTCGCAAAGGGAACACATACCCAGCATTTCAGCTTTTGTATGAAATGACAAAGTATGGATTTGTTCCAGACTCCTACACTTATTCATCTCTGATCAGAGGTTTGTGTTCAGAAGGAATGCTGGATGAAGCCATGGAGATATTCAGTATAATGGAAGAAAATTACTGCAGGCCTGATGTTGACAATTTTAATGCGCTAATACTTGGGTTATGCAAATGTCGAAAAACAGATTTGTCATTGATGGTTTTTGAGATGATGGTCAAGAAGGGCTATATGCCTAATGAAACAACTTATACCATCATCGTGGAAGGGATTGCCCACCAAGAAGAAATGGAGCTGGCAGCAGCTGTTCTAAAAGAGTTGTATCTAAGACAAGCTGTGGGCAGAAGTACCTTAGAAAGGCTTGTTATGCAATATGACCTTGAGGGATTACCAATTTAA | 1704 | 0.4249 | MAILVNAMSPITSPSPENARKVCGFFSQVPNLHTLSLNKGFSRVLASTQITISPKDNVFTLPNWRSGKNDPRTRDLRLNDAFLYLEYMIGKGHKPDGGQATQLMYELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEGKVDLVVKCLDQMMYRRCNPNEGTYNAIAVLCEEGKVQEAFSIIQSLGNKQNSSTHDFYKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAVLKELYLRQAVGRSTLERLVMQYDLEGLPI* | 568 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi19g1177 | 567 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 410 | 444 | IPR002885 | - | |
| Vvi19g1177 | 567 | Pfam | PPR repeat | 134 | 162 | IPR002885 | - | |
| Vvi19g1177 | 567 | Pfam | PPR repeat | 103 | 127 | IPR002885 | - | |
| Vvi19g1177 | 567 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 131 | 165 | IPR002885 | - | |
| Vvi19g1177 | 567 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 445 | 479 | IPR002885 | - | |
| Vvi19g1177 | 567 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 341 | 375 | IPR002885 | - | |
| Vvi19g1177 | 567 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 304 | 542 | - | - | |
| Vvi19g1177 | 567 | Pfam | PPR repeat family | 343 | 382 | IPR002885 | - | |
| Vvi19g1177 | 567 | Pfam | PPR repeat family | 166 | 211 | IPR002885 | - | |
| Vvi19g1177 | 567 | Pfam | PPR repeat family | 235 | 283 | IPR002885 | - | |
| Vvi19g1177 | 567 | Pfam | PPR repeat family | 479 | 527 | IPR002885 | - | |
| Vvi19g1177 | 567 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 166 | 200 | IPR002885 | - | |
| Vvi19g1177 | 567 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 201 | 235 | IPR002885 | - | |
| Vvi19g1177 | 567 | Gene3D | Tetratricopeptide repeat domain | 382 | 562 | IPR011990 | GO:0005515 | |
| Vvi19g1177 | 567 | Gene3D | Tetratricopeptide repeat domain | 302 | 369 | IPR011990 | GO:0005515 | |
| Vvi19g1177 | 567 | Gene3D | Tetratricopeptide repeat domain | 72 | 159 | IPR011990 | GO:0005515 | |
| Vvi19g1177 | 567 | Gene3D | Tetratricopeptide repeat domain | 160 | 229 | IPR011990 | GO:0005515 | |
| Vvi19g1177 | 567 | Gene3D | Tetratricopeptide repeat domain | 230 | 301 | IPR011990 | GO:0005515 | |
| Vvi19g1177 | 567 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 480 | 514 | IPR002885 | - | |
| Vvi19g1177 | 567 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 271 | 305 | IPR002885 | - | |
| Vvi19g1177 | 567 | Pfam | PPR repeat | 304 | 334 | IPR002885 | - | |
| Vvi19g1177 | 567 | Pfam | PPR repeat | 441 | 473 | IPR002885 | - | |
| Vvi19g1177 | 567 | SUPERFAMILY | HCP-like | 81 | 264 | - | - | |
| Vvi19g1177 | 567 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 236 | 270 | IPR002885 | - | |
| Vvi19g1177 | 567 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 306 | 340 | IPR002885 | - | |
| Vvi19g1177 | 567 | NCBIfam | pentatricopeptide repeat | 168 | 202 | IPR002885 | - | |
| Vvi19g1177 | 567 | NCBIfam | pentatricopeptide repeat | 273 | 299 | IPR002885 | - | |
| Vvi19g1177 | 567 | NCBIfam | pentatricopeptide repeat | 484 | 516 | IPR002885 | - | |
| Vvi19g1177 | 567 | NCBIfam | pentatricopeptide repeat | 344 | 377 | IPR002885 | - | |
| Vvi19g1177 | 567 | NCBIfam | pentatricopeptide repeat | 238 | 272 | IPR002885 | - | |
| Vvi19g1177 | 567 | NCBIfam | pentatricopeptide repeat | 308 | 340 | IPR002885 | - | |
| Vvi19g1177 | 567 | NCBIfam | pentatricopeptide repeat | 134 | 164 | IPR002885 | - | |
| Vvi19g1177 | 567 | NCBIfam | pentatricopeptide repeat | 414 | 446 | IPR002885 | - | |
| Vvi19g1177 | 567 | NCBIfam | pentatricopeptide repeat | 447 | 481 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi19g1177 | 199 | 543 | Glycosyltransferase | AT1G05670 | 26.359 | 3.11e-33 | 133 |