Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1176 ATGGAAGATATAGGGTTGTTCAAACAAGGGTGGAAATGGGTTCAATCGAAGAGCAACAATTACTCTGCTGTGAAAACAGCTGCAGGCGGTTTTCGGGACAAAATTGGGAAATTTATGGAGCGGCATTGGCCGATGGTGTGCAGCGGGTGCACGAAATTCTGGCGATTGGTGTTATTGGTATTGCGGAAGTGGAAAGATAGCACTGTTCGGGGTTTTCGATCTATTATAGAACTGGGTTCGGCGGCTTTGCTTATTATAATGTGGAGTTGCTTTCTTAGTTTAACTTCAATGACTTGTCTAGTTTATGTACTGCTTAGTATGGGAGCTGCTGGAACTGCTATTCAGTACTTGGGCTATACTCCTGGGCTTTTTATTGTAGGGCTGTTTGCTATACTGATTTTATGGATGTATGCCAACTTTTGGATAACTGGGACATTGTTTGTGGTTGGAGGTTATTTGTTCTCCCGAAATCATGCCCGGGTTGTGGTGCTGGTGGCAACTCTATATGCTATCTATTGTGTCAAAGTTCGAGTTGGATGGTTTGGAGTATTGCTCTCGATAAACCTTTCATTCATCTCAAATGATATATTCAATTACTTGCTCCCCTTGTGTGACAATGTGAGTGAAAGCCAACACTTTGAAGAGCAAAAAGAATCAGAATCAGAATCAATTACAGAAGATGATATATCTGGAAAATGTGACTTCTCTGTTCCTACCGAGGAAGCTGAAAAACTGCAGTCATGTAAATCAAGCAGCAAAGCAGCTGCTACTATGACTGTTATTAGTAAGCTGGAAGAGTCTTCTACTAGCCAGATTGTTAAGGAAGATGCAAGTTCAGTGGATGAGATGAACAGGATATTATGTAGTGTAGATCATTATGATGCGTTGGGATTTCAACGCCACAAGAAAATTGATGCTGCTAGTTTAAAGAAGGAATACCGGAAGAAGGCCATGCTTGTGCATCCTGATAAAAATATGGGGAGTCTACAGGCAAGCGATTCATTTAAAAAACTTCAATGTGCATATGAGGTTCTTTCTGATTCTACAAAGAAGCGAGATTATGATGAGCAGCTGAGAAAGGAAGAATCCAAAAGTGTATGTCAGAAGTCGCATGGAAGTTCACATCAGGGTAATCCAGATTATTGCTCTGAAGAATCAAGGCGTATACAATGCACGAAGTGTGGCAATTCACATATATGGGTGTGCACCAATAGGACGAAGGCCAAGGCAAGATGGTGTCAGGATTGCTGTCAATATCATCCAGCCAGGGATGGAGACGGATGGGTTGAATATAGAGGCTCATTAGTCTTTGATAGGCCTCAAAAGGTAGAAATACCTCGTGCTTTTGTTTGTGCTGAGAGCAAGATCTTTGATGTGTCAGAATGGGCTATTTGTCAGGGAATGGCATGCAGACCCAACACCCATCGTCCGAGCTTCCATGTCAACATGGTTGGTTTGGAGAAGACACAGAGATCCAAGTCAAGTAGATTCCCATGGGACTTAGGTGCTGAAATGATGGATGAAGATGATGAATTCGAGCTGTGGTTTCAGCAGGCTCTGGCGTCAGGGCTCTTCTGTGAGCCCTCCAAACGTAGAAAGAGCTGGAGTCCATTCAAGATGCATCAGAAGAAAGGGAAGCAGCAATGGCGAAGATGGTCCTGA 1662 0.4302 MEDIGLFKQGWKWVQSKSNNYSAVKTAAGGFRDKIGKFMERHWPMVCSGCTKFWRLVLLVLRKWKDSTVRGFRSIIELGSAALLIIMWSCFLSLTSMTCLVYVLLSMGAAGTAIQYLGYTPGLFIVGLFAILILWMYANFWITGTLFVVGGYLFSRNHARVVVLVATLYAIYCVKVRVGWFGVLLSINLSFISNDIFNYLLPLCDNVSESQHFEEQKESESESITEDDISGKCDFSVPTEEAEKLQSCKSSSKAAATMTVISKLEESSTSQIVKEDASSVDEMNRILCSVDHYDALGFQRHKKIDAASLKKEYRKKAMLVHPDKNMGSLQASDSFKKLQCAYEVLSDSTKKRDYDEQLRKEESKSVCQKSHGSSHQGNPDYCSEESRRIQCTKCGNSHIWVCTNRTKAKARWCQDCCQYHPARDGDGWVEYRGSLVFDRPQKVEIPRAFVCAESKIFDVSEWAICQGMACRPNTHRPSFHVNMVGLEKTQRSKSSRFPWDLGAEMMDEDDEFELWFQQALASGLFCEPSKRRKSWSPFKMHQKKGKQQWRRWS* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1176 553 CDD DnaJ 291 347 IPR001623 -
Vvi19g1176 553 ProSiteProfiles dnaJ domain profile. 291 358 IPR001623 -
Vvi19g1176 553 Pfam DnaJ domain 291 355 IPR001623 -
Vvi19g1176 553 Pfam Cleavage inducing molecular chaperone 385 482 IPR032843 -
Vvi19g1176 553 SUPERFAMILY Chaperone J-domain 289 360 IPR036869 -
Vvi19g1176 553 PANTHER OS03G0832900 PROTEIN 1 549 - -
Vvi19g1176 553 ProSitePatterns Nt-dnaJ domain signature. 335 354 IPR018253 -
Vvi19g1176 553 PRINTS DnaJ domain signature 330 350 IPR001623 -
Vvi19g1176 553 PRINTS DnaJ domain signature 313 328 IPR001623 -
Vvi19g1176 553 SMART dnaj_3 290 350 IPR001623 -
Vvi19g1176 553 Gene3D DnaJ domain 279 377 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1176 Vvi-Chr19 19247829 19265051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1176 1 547 Miscellaneous Gene Families AT1G16680 67.450 0.0 731