Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1163 ATGCTGACGCGCGCCCGTTGTCTTTCCTTCTTCTTCGCCAAAACCCCAATACTTTGCCATGTCGGCCATACTCGCCTACGCCCACTTCTCCACGGTTGCTCTCATCACCATTTCAAACCCACTACCTACAGTCCCTACATCAAAGATCGCATTTTTATGAACAAATCAGCGCATTTCTCGAATTTAGCTCTCTCTGCAACCAATAAATATATTCCTGAATCGTCAGCAGCAGCAAAAACAATGTCCAACAAAGCCAGGAAGAAGGCCAGACGAGAATCGCCTGAAGGAGTGCTCAGATTTAAACTAGATATGTGTTCGAAGCGCGGTGATGTTGTGGAAGCTCTTCGCCTTTATGATGAGGCTAGGAGTCTAGGGGTTCCGCTTAGCCAGCACAATTACAATGTTTTATTGTATTTGTGCTCTTGTTCGGGGTCGAATGGGGATGAGAATGTGGTGAATTTGGCGTTGAAGAGAGGTTTTGAGATTTTTAAGCAAATGGGTGTTGATGGAATTGAGCCTAACGAGGCTACATTTACTAGTGCGGCGAGGTTGGCCTGTGCGATGGAGGACCCAGAAATGGCGTTTAATTTGGTGAAGCAGATGAAGAGTTGTGGTATTCCCCCCAAGTTGAGGTCGTATGGACCACCACTGTTTGGGTTTTGTAAGAAGGGGGATGCGAATAGAGCATATGAGGTCGATGCCCACATGGTGGAATCCGGTGTGGTTGCTGAAGAACCTGAGCTCTGTGCTCTGCTTGGGCTTAGTGTGGAGTCGCGGTGGGTGGACCAGGTGTATGAGATGATGCACCGCTTGCGAGCATCCGTGAGGCAGGTCTCAGAATCAACTGCTGAGGTTGTTGAACGATGGTTCAATTCCGAAGATGCTGCAGGAGTTGGGGAGGAGAATTGGGACGTGGGGAAGGTGAGGGAAGGGGTTGTCAAAGGGGGAGGGGGCTGGCATGGGCAAGGGTGGCTGGGGAAAGGGAAATGGAAGGTGGGGAGGACTGAGATGGATGAGGCGGGTGTGTGTCAGTCGTGTGGCGAGAAGCTTGTTGGCATTGATATTGATCCAAGGGAGACTGAGAACTTTGCTAGCTCTTTGACCAAGTTGGCTTGCCAAAGAGAAGTTAAGGCAGATTTTGTCCAGTTTCAGGAGTGGCTTCAGTGGCATGGTCCATTTGATGCAGTGGTAGATGGTGCCAATGTGAGCCTGATCAATCAAAAGAGCTTCAGCTTTTTCGAGCTTAACTCTGTTGTAAATTGCTTACGTCAAATAAGTCCATCAAAGCAATTACCACTTGTTATCTTGCATAGAAGTCGTGTAACTGGTGGTCCTGCTCAGAATCCCAATAACGAGAAGTTGATACAGAGTTGGAAAAAATCTGGTGCACTTTATGCTACGCCTGCTGGTTCAAATGATGATTGGTACTGGTTATATGCTGCTGTTAATGGTAACTGCTTGCTAGTGACAAATGATGAGATGCGAGATCATTTGTTCCAGCTGCTTGGAACTAGCTTTTTTCCTAGATGGAAGGAAAAGCATCAGGTTAGGCTGACGATGACTAGGCGTGGCCCTGTTCTCCATATGCCACCTCCATATTCAATTGTTATCCAGGAGTCAGAACAGGGTAGTTGGCATGTACCAACTGTCATAGGCGACGACCTTGAGACCCCGAGACAGTGGCTATGTGCCACCAGAACTAGGAAAAACCATCGGCATCCTCAGCATTTAGAGTGA 1737 0.4807 MLTRARCLSFFFAKTPILCHVGHTRLRPLLHGCSHHHFKPTTYSPYIKDRIFMNKSAHFSNLALSATNKYIPESSAAAKTMSNKARKKARRESPEGVLRFKLDMCSKRGDVVEALRLYDEARSLGVPLSQHNYNVLLYLCSCSGSNGDENVVNLALKRGFEIFKQMGVDGIEPNEATFTSAARLACAMEDPEMAFNLVKQMKSCGIPPKLRSYGPPLFGFCKKGDANRAYEVDAHMVESGVVAEEPELCALLGLSVESRWVDQVYEMMHRLRASVRQVSESTAEVVERWFNSEDAAGVGEENWDVGKVREGVVKGGGGWHGQGWLGKGKWKVGRTEMDEAGVCQSCGEKLVGIDIDPRETENFASSLTKLACQREVKADFVQFQEWLQWHGPFDAVVDGANVSLINQKSFSFFELNSVVNCLRQISPSKQLPLVILHRSRVTGGPAQNPNNEKLIQSWKKSGALYATPAGSNDDWYWLYAAVNGNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTMTRRGPVLHMPPPYSIVIQESEQGSWHVPTVIGDDLETPRQWLCATRTRKNHRHPQHLE* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1163 578 Gene3D Tetratricopeptide repeat domain 94 566 IPR011990 GO:0005515
Vvi19g1163 578 FunFam Proteinaceous RNase P 1, chloroplastic/mitochondrial 95 362 - -
Vvi19g1163 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vvi19g1163 578 PANTHER UNCHARACTERIZED 66 567 - -
Vvi19g1163 578 Gene3D - 355 529 - -
Vvi19g1163 578 Pfam Pentacotripeptide-repeat region of PRORP 86 296 IPR033443 -
Vvi19g1163 578 Pfam Protein-only RNase P 337 563 IPR031595 -
Vvi19g1163 578 FunFam Proteinaceous RNase P 2 355 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1163 Vvi-Chr19 18993350 19006745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1163 102 241 Miscellaneous Gene Families AT4G11690 29.078 2.59e-11 64.3