Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1159 ATGTCAAATTCTTCTGAGACTTCGGATATACCCTCTTTGAGTGATTTATCCTACATGTTATTTCTTCTTATCTTAGTTAGCTTCACATTTACCAGCATTATGGCTGCCTGCATGACCTTAGCATTTTTGAATTGTGGACAACAGATTCATGGGAGGATTATTCGAAGAGGCCTTGATGGGAATTTGGCCTTGTTTAATGCCCTTATAGACATGTATTCCAAATGTGGAAATATTGCTGATTCGCACCAAGTTTTTGGGGGTATGTCTCGTAGAGATTTGGTTTCTTGGACTACCATGATGATTGGGTATGGGACTCATGGTCATGCTGGACTTGTAGATGAAGGCTTGAGATATTTTAAATTAATGGTGGGTGATTATAACATTAGTCCAGACCAGGAGATTTATGGGTGTGAAGTGGATTTGCTAGGACGTGCTGGGAAAGTTGAGGAAGCTTATGAACTCATAGAGAGCATGCCATTCAAGCCTGATGAGTGCGTTTGGGGGCCATTTCTTGGAGCTTGTAAAGTACACAGGTTTCCCAATTCTAGAAAATTAGCTGCTCACAGGATATTGGATCTGAGGCCTAATATGGCAGGGACTTATGTGATGCTATCAAATATATATGCAGCTGATGGTAAGTGGGGGAGTTTGTAA 654 0.4098 MSNSSETSDIPSLSDLSYMLFLLILVSFTFTSIMAACMTLAFLNCGQQIHGRIIRRGLDGNLALFNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTTMMIGYGTHGHAGLVDEGLRYFKLMVGDYNISPDQEIYGCEVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKVHRFPNSRKLAAHRILDLRPNMAGTYVMLSNIYAADGKWGSL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1159 217 Pfam PPR repeat 94 123 IPR002885 -
Vvi19g1159 217 Pfam PPR repeat 65 92 IPR002885 -
Vvi19g1159 217 Pfam PPR repeat 140 158 IPR002885 -
Vvi19g1159 217 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 61 95 IPR002885 -
Vvi19g1159 217 NCBIfam pentatricopeptide repeat 65 94 IPR002885 -
Vvi19g1159 217 Gene3D Tetratricopeptide repeat domain 23 106 IPR011990 GO:0005515
Vvi19g1159 217 Gene3D Tetratricopeptide repeat domain 107 216 IPR011990 GO:0005515
Vvi19g1159 217 FunFam Uncharacterized protein 101 216 - -
Vvi19g1159 217 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 108 216 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1159 Vvi-Chr19 18966671 18967420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1159 27 214 Glycoside Hydrolase AT3G49170 40.909 2.23e-52 178