Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1155 ATGAGCATTATTGAGATGGTTGAGTCAAGGTTGCCACCAGGTTTCAGGTTCCATCCAAAAGATGAAGAGCTTATATGTGATTACCTGATGAAGAAGGTCACTTCCTCTGAATCTTCTCTGTTCATTGAAGTTGATCTCAACAAGTGTGAGCCTTGGGATATTCCTGAGATGGCATGTGTTGGGAGCAAAGATTGGTATTTCTACAACCAGAGAGATAGGAAATATGCAACAGGACTTAGAACAAATAGGGCAACACTATCTGGATATTGGAAGGCGACAGGCAAGGACAGGCCGATCCTTAGCAAGGGCACCCTTGTTGGCATGAGGAAGACCTTGGTCTTCTACCAAGGTAGGGCACCCAAAGGCAAAAAGACTGACTGGGTCATGCATGAGTTTCGCCTCCAAGGCCCTCTCACCCCACCTGCCATTCCTTCTCTCAAGGAAGATTGGGTTCTATGTAGAGTGTTCAACAAAAGTAGATCAGAAGCAGCAGGCAAGGCAATAACAAGCAACATGGGGAATGGGTACTATGACAACATGAACATGGGCTCTTCAACTCTTCCACCACTAGTGGATTCTTACATCAATTTTGATCAAACTGAAATCAAACTCAATGAATATGAGCAAGTGCCCTGCTTCTCCGATATGTGCTCCCCAAACCCATCAAACCTAGTGTTCCCACACATCACCCATTTGGAGCCACACTTGCTCACTAAAACTATTGCACCCATATTTGGAGGAATGCCAGACTTGGGTACTTTCTCTTGTGATAAAATGGTAATAAAGACTGTGTTGAACCAGCTCTCCAATGTGGAAGAGTCACCAAGCTTTGGGGAAGGGAGTTCATCAGAGAGCTACTTGTCTGAAGTGGCTCTGCCCCCCATTTGGAACCATTATTGTTAG 903 0.4518 MSIIEMVESRLPPGFRFHPKDEELICDYLMKKVTSSESSLFIEVDLNKCEPWDIPEMACVGSKDWYFYNQRDRKYATGLRTNRATLSGYWKATGKDRPILSKGTLVGMRKTLVFYQGRAPKGKKTDWVMHEFRLQGPLTPPAIPSLKEDWVLCRVFNKSRSEAAGKAITSNMGNGYYDNMNMGSSTLPPLVDSYINFDQTEIKLNEYEQVPCFSDMCSPNPSNLVFPHITHLEPHLLTKTIAPIFGGMPDLGTFSCDKMVIKTVLNQLSNVEESPSFGEGSSSESYLSEVALPPIWNHYC* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1155 300 SUPERFAMILY NAC domain 6 158 IPR036093 GO:0003677|GO:0006355
Vvi19g1155 300 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Vvi19g1155 300 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Vvi19g1155 300 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 182 - -
Vvi19g1155 300 FunFam NAC domain-containing protein 100-like 20 162 - -
Vvi19g1155 300 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1155 Vvi-Chr19 18785509 18790092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1155 2 297 NAC Transcription Factor Family AT1G56010 53.727 5.84e-108 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g1155 NAM 5.7e-36 No_clan