Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1153 ATGGATTTAGGAAGACTAGCCCTCAATTTCCACCATTTTCCTCTCAAAACTCTACTCCCATCTGCTTTCCCGTCATCCTCTTTACCTCCCCATATGGGCGCTAAAAGGCAGCAAATGAGACTCCGCTGTGAGTTCGAAGTCAAAGTGAATGGCGCTCTCTCCTCCGACCCCGACCCCCGATTCCTCGACCGGCAAAAGGCGCTGGAAGCTGCAATGAATGATATCAATAGTTCATTTGGGAAAGGTAGTGTTACGAGATTGGGGAGTGCTGGTGGAGCTCTCGTTGAAACTTTTCCCAGTGGCTGTTTGACTTTGGACTTCGCCCTTGGTGGTGGCCTTCCCAAAGGGAGAATTGTGGAGATATATGGACCAGAAAGTAGTGGAAAGACTACCCTAGCACTCCATGCTATTGCAGAAGTGCAGAAGCTGGGAGGCAATGCCATGCTTGTTGATGCTGAGCATGCTTTTGATCCAGCATACTCCAAAGCATTGGGAGTCGATGTTGAAAATTTAATTGTCTGCCAACCTGATCATGGGGAGATGGCACTGGAGATTGCAGACCGTATGTGCAGATCTGGTGCTATAGATCTTATTTGTGTTGATTCTGTCTCAGCTCTCACACCACGTGCTGAGATTGAAGGTGAAATTGGGATGCAGCAAATGGGTTTGCAGGCACGTCTTATGAGCCAAGCTTTGCGTAAAATGTCAGGAAATGCTTCCAAAGCTGGATGTACTCTTATTTTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTACGGCAATCCTGAAGTCACCAGTGGTGGTATTGCTTTAAAGTTCTTTGCTTCACTGCGCCTGGAGATACGTCCTATAGGAAAAATAAAGTCTAGTAAAGGTGATGAAGACATTGGGCTACGAGTTCGTGTGAGAGTGCAAAAGAGTAAGGTTTCCAGGCCATACAAGCAAGCTGAATTTGAAATAATATTTGGAGAGGGAGTGAGTAAACTGGGTTGCATTTTGGATTGTGCTGAACTGATGGATGTTGTGGTAAAGAAGGGCTCTTGGTATAGCTATGGGGACAATAGGTTGGGACAAGGAAGAGACAGAGCATTACAGTACTTGAGAGAGAACCCTCTTGTTTGCCATGAAATCGAAAAGATAGTTCGACCCATGATGGCTGAGGGAATTGGACAATTAGGCGCTCCACATGTGAGGCTCTCGCCGACATCGCCTGAAGATGAAGATATTCTTGAGGAGATCAGGTAA 1248 0.4583 MDLGRLALNFHHFPLKTLLPSAFPSSSLPPHMGAKRQQMRLRCEFEVKVNGALSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIKSSKGDEDIGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSWYSYGDNRLGQGRDRALQYLRENPLVCHEIEKIVRPMMAEGIGQLGAPHVRLSPTSPEDEDILEEIR* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1153 415 SMART AAA_5 115 286 IPR003593 GO:0016887
Vvi19g1153 415 ProSiteProfiles RecA family profile 2. 257 332 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vvi19g1153 415 PRINTS RecA protein signature 268 296 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g1153 415 PRINTS RecA protein signature 303 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g1153 415 PRINTS RecA protein signature 357 374 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g1153 415 PRINTS RecA protein signature 185 214 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g1153 415 PRINTS RecA protein signature 223 252 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g1153 415 PRINTS RecA protein signature 151 180 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g1153 415 MobiDBLite consensus disorder prediction 396 415 - -
Vvi19g1153 415 CDD RecA 95 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g1153 415 PANTHER RECA 54 388 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g1153 415 ProSitePatterns recA signature. 271 279 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vvi19g1153 415 Hamap Protein RecA [recA]. 64 389 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g1153 415 ProSiteProfiles RecA family profile 1. 94 252 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vvi19g1153 415 Pfam recA bacterial DNA recombination protein 66 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g1153 415 SUPERFAMILY RecA protein, C-terminal domain 328 385 IPR023400 -
Vvi19g1153 415 Gene3D - 93 387 IPR027417 -
Vvi19g1153 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 327 IPR027417 -
Vvi19g1153 415 FunFam DNA repair protein recA 1 like 93 388 - -
Vvi19g1153 415 NCBIfam recombinase RecA 63 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1153 Vvi-Chr19 18712666 18722749 Dispersed