Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1145 ATGGCTTCGCTAGCTTCCCTTGTGAGTTTGGGAAGCGCTGGTGCCAGTTCCTCTGGACATTTCGAGGGATCTCTTCTGCTACAACGGAGAGTTTCCCTATCAAGACGCAATTTTGGGGGTGGGAAGAGATGGGGGTTGGTTTCGGTTTGTAAATATTCGGGCACAATGACTAATGTTATTGCTGAGGAAGGGAATGCGGTTTCTGTGGATTCTTCTACGTATAGGGGTGGTGGTAAGGACGAGGATAATGGCCTTGTCCTCAAGCCTGCGCCAAAGCCTGTGTTGAAACCCGTGAATTCTGTAGTTTCTTGGGATGCAGGGTCGAAAATTAGTGGGGACTCTGATGATGATGAGAAGTTGGAGAATGTGGATGAGAGGAATAAGGTGATAGAGTCACTGGGAGAGGTGTTGGAGAAGGCTGAAAAGCTTGAAACTGGCAGGTTGGGTGAGTTAGGAAGTAAAAGGGAAAGTGGGTCTGTGGATAAATCACCCCCCGGTACCAATGACAATTCAACAGTTGGTAGAACGGTGAATAATTCAAATGCCAGTAAGAAATCTAAAACCTTAAAGAGTGTGTGGCGGAAAGGAAATCCGGTTGCTACGGTTGAAAAGGTTGTTAAGGATGCTTCTAATAATATTACTAACACTGAAAGAGAGGGACCTGAGGTCGGGAGGAAGGTAGAAACTCAGCCCAGGATTCCTTTGAGACCCACTCAGCCGCCTTTGAGAGCTCAACCAAAGTTGCAAGCTAAACCTTCGGTTGCTCCTCCTCCTCCTGTCTTAAAGAAACCTGTTATCTTGAAGGATGTGGGGGCAGCTCCTAAGTCATCAGGGATTGATGAAACTGATTCAGGCAAAACCAGAGAGCGGAAACCAATCTTGATTGACAAATTTGCTTCCAAGAGACCAGTGGTTGATCCGATGATAGCGCAAGCAGTTTTAGCTCCTCCAAAACCCGGAAAGGGGCCTGTACCTGGTAAATTCAAGGATGATTATCGCAAGAAAAATGCTTCAACTGGAGGATCACGCAGAAGAATGGTTGCTGCCAATGACATGGAGATTCCGGATGATGAGACATCAGAACTGAATGTGTCTATTCCTGGGGCGGCTACAGCAAGAAAAGGGAGGAAATGGAGTAAGGCAAGTCGGAAGGCTGCTAGACTTCAAGCAGCTAAAGATGCGGCTCCTGTTAAAGTTGAAATTCTAGAGGTTGGGGAAGAAGGTATGTTGACAGAAGACTTAGCGTACAACTTGGCCATCAGTGAAGGTGAAATTCTTGGTTTTCTATACTCAAAAGGTATTAAGCCAGATGGGGTGCAAACTCTGGACAAAGACATGGTTAAGATGATTTGCAAAGAGTATGAGGTAGAAGTTATTGATGCTGCCGGTGTTAAAGTGGAAGAAATGGCAAGGAAGAAGGAAATTCTTGATGAAGAAGACCTGGACAAACTAGAAAACAGACCTCCTGTCCTGACTATAATGGGTCACGTGGATCATGGCAAGACCACCCTTTTGGATCATATTCGGAAGAGCAAGGTAACTGCATCGGAAGCAGGAGGGATTACACAAGGAATTGGTGCATATAAGGTTTTAGTGCCCATCGATGGCAAGCCACAGTCATGTGTTTTCCTTGATACACCTGGACACGAGGCGTTTGGGGCGATGAGAGCTCGTGGAGCAAGGGTTACCGACATTGCTATTATTGTTGTGGCTGCTGATGATGGAATTCGTCCTCAAACAAATGAGGCCATAGCTCATGCTAAAGCAGCTGGGGTACCAATTGTAATAGCTATAAATAAGATAGATAAGGATGGAGCTAACCCAGAACGAGTCATGCAAGAGCTTTCGTCTATTGGTCTAATGCCAGAAGATTGGGGTGGTGATATCCCAATGGTTCAGATCAGTGCTCTTAAAGGGGAGAATGTAGATGATTTGTTAGAAACTATCATGCTTGTAGCAGAGTTGCAAGAGTTGAAGGCTAATCCTGATAGAAACGCAAAGGGCACAGTCATTGAGGCTGGTCTTGATAAATCGAAGGGACCGGTTGCTACATTCATTGTGCAGAATGGAACGCTCAAAAGGGGAGATATAGTGGTTTGTGGTGGCGCCTTCGGCAAGGTGCGGGCTTTGTTTGATGATGGTGGGAAGCGTGTTGATGCAGCTGGACCTTCTATACCTGTCCAGGTCATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTCGTTGGCTCCCTTGATATTGCTCGAGAAAGAGCGGAGGCACGTGCAGAGTCATTGCGACAAGAACGTATATCATCAAAGGCTGGTGATGGGAAGGTTACACTTTCTTCCTTTGCTTCTGCAGTTTCAGGTGGAAGCCAGTCTGGATTAGACTTGCATCAGTTGAATATTATTATGAAGGTTGATGTTCAGGGTTCCATTGAGGCTGTGAGGCAAGCCTTACAGGTGCTTCCTCAAGATAATGTCGCTTTAAAGTTCCTCCTCCAAGCAACCGGGGATATAAGTGCTAGTGATATTGATCTTGCAGTTGCTAGCAAGGCTATTGTTATAGGATTTAATGTTAGAGCACCTGGCTCTGTTAAGAGTTATGCTGACACCAAAGGGGTAGAGATTCGACTGTACAAAGTTATTTATGATCTTATTGATGATGTGCGGAATGCAATGGAAGGACTCCTGGATGCTGTTGAGGAAGAAATAACAATTGGCACAGCAGAAGTTCGGGCCACATTCACCAGCGGCAGTGGCCGGATTGCTGGTTGCATGGTAAAGGAGGGAAAGGTAGAGAAAGGTTGTGGCATTCGGGTGGTACGAGATGGCAGGGCAGTCTATGTTGGTACTCTTGATTCTTTGAGACGAGTTAAAGAAATTGTGAAAGAGGTAAATGCTGGACTAGAGTGTGGGATGGGAATGGAAGACTACAATGATTGGGAGGTGGGAGACATTGTCCAGGCCTTCAACAAGAAGCAGAAGAAACGAACGCTTGAAGAGGCATCGGCTTCAATGACAGCTGCACTGGAAGTGGCAGGAATTGAAAAATAA 3048 0.4583 MASLASLVSLGSAGASSSGHFEGSLLLQRRVSLSRRNFGGGKRWGLVSVCKYSGTMTNVIAEEGNAVSVDSSTYRGGGKDEDNGLVLKPAPKPVLKPVNSVVSWDAGSKISGDSDDDEKLENVDERNKVIESLGEVLEKAEKLETGRLGELGSKRESGSVDKSPPGTNDNSTVGRTVNNSNASKKSKTLKSVWRKGNPVATVEKVVKDASNNITNTEREGPEVGRKVETQPRIPLRPTQPPLRAQPKLQAKPSVAPPPPVLKKPVILKDVGAAPKSSGIDETDSGKTRERKPILIDKFASKRPVVDPMIAQAVLAPPKPGKGPVPGKFKDDYRKKNASTGGSRRRMVAANDMEIPDDETSELNVSIPGAATARKGRKWSKASRKAARLQAAKDAAPVKVEILEVGEEGMLTEDLAYNLAISEGEILGFLYSKGIKPDGVQTLDKDMVKMICKEYEVEVIDAAGVKVEEMARKKEILDEEDLDKLENRPPVLTIMGHVDHGKTTLLDHIRKSKVTASEAGGITQGIGAYKVLVPIDGKPQSCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGENVDDLLETIMLVAELQELKANPDRNAKGTVIEAGLDKSKGPVATFIVQNGTLKRGDIVVCGGAFGKVRALFDDGGKRVDAAGPSIPVQVIGLNNVPIAGDEFEVVGSLDIARERAEARAESLRQERISSKAGDGKVTLSSFASAVSGGSQSGLDLHQLNIIMKVDVQGSIEAVRQALQVLPQDNVALKFLLQATGDISASDIDLAVASKAIVIGFNVRAPGSVKSYADTKGVEIRLYKVIYDLIDDVRNAMEGLLDAVEEEITIGTAEVRATFTSGSGRIAGCMVKEGKVEKGCGIRVVRDGRAVYVGTLDSLRRVKEIVKEVNAGLECGMGMEDYNDWEVGDIVQAFNKKQKKRTLEEASASMTAALEVAGIEK* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1145 1015 Coils Coil 745 765 - -
Vvi19g1145 1015 FunFam Translation initiation factor IF-2 899 996 - -
Vvi19g1145 1015 CDD IF2_mtIF2_II 666 750 IPR044145 -
Vvi19g1145 1015 Coils Coil 199 219 - -
Vvi19g1145 1015 PRINTS GTP-binding elongation factor signature 558 569 IPR000795 GO:0003924|GO:0005525
Vvi19g1145 1015 PRINTS GTP-binding elongation factor signature 490 503 IPR000795 GO:0003924|GO:0005525
Vvi19g1145 1015 PRINTS GTP-binding elongation factor signature 594 603 IPR000795 GO:0003924|GO:0005525
Vvi19g1145 1015 PRINTS GTP-binding elongation factor signature 542 552 IPR000795 GO:0003924|GO:0005525
Vvi19g1145 1015 MobiDBLite consensus disorder prediction 71 92 - -
Vvi19g1145 1015 FunFam Translation initiation factor IF-2 483 661 - -
Vvi19g1145 1015 ProSitePatterns Initiation factor 2 signature. 948 970 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vvi19g1145 1015 CDD mtIF2_IVc 905 987 - -
Vvi19g1145 1015 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 486 659 IPR000795 GO:0003924|GO:0005525
Vvi19g1145 1015 Gene3D Translation factors 662 777 - -
Vvi19g1145 1015 MobiDBLite consensus disorder prediction 147 294 - -
Vvi19g1145 1015 FunFam Translation initiation factor IF-2 794 899 - -
Vvi19g1145 1015 Pfam Translation-initiation factor 2 794 887 IPR023115 -
Vvi19g1145 1015 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 174 1004 IPR015760 -
Vvi19g1145 1015 MobiDBLite consensus disorder prediction 314 342 - -
Vvi19g1145 1015 MobiDBLite consensus disorder prediction 324 338 - -
Vvi19g1145 1015 NCBIfam translation initiation factor IF-2 409 997 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vvi19g1145 1015 Hamap Translation initiation factor IF-2 [infB]. 28 995 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vvi19g1145 1015 Gene3D - 483 661 IPR027417 -
Vvi19g1145 1015 Gene3D Translation factors 899 996 - -
Vvi19g1145 1015 Pfam Elongation factor Tu GTP binding domain 491 651 IPR000795 GO:0003924|GO:0005525
Vvi19g1145 1015 SUPERFAMILY Translation proteins 900 995 IPR009000 -
Vvi19g1145 1015 FunFam Translation initiation factor IF-2 662 779 - -
Vvi19g1145 1015 NCBIfam small GTP-binding protein domain 489 649 IPR005225 GO:0005525
Vvi19g1145 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 662 IPR027417 -
Vvi19g1145 1015 Gene3D - 794 898 IPR036925 -
Vvi19g1145 1015 CDD IF2_eIF5B 489 655 - -
Vvi19g1145 1015 MobiDBLite consensus disorder prediction 160 187 - -
Vvi19g1145 1015 SUPERFAMILY Translation proteins 662 745 IPR009000 -
Vvi19g1145 1015 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 793 905 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1145 Vvi-Chr19 18432171 18444984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1145 469 885 Eukaryotic Initiation Factors Gene Family AT1G76810 28.195 4.15e-28 120