Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1141 ATGGTTGGGGATTGTGATGATGATCAATGGATTGACCCACTGCTCATAACCGACGCCTCTTTGCAGCAGCAAGTCTCGCAGTACCCACTCAGCTTCACTGCTTCTGCAATGGCAGATCCACTCGATGTTAATTCGAACATCAAAGAGGATGTTTCTTGTGAAGATCAAAGCTTGGAAACAATTAGCAGTCAGAATTTCAATGACCCACTTGCAGATGGTGTTTTTGATGGTCGGTCAATTTTGGGATTTTCTCTGACATCTCCAGATTTGGTTATCTGCACTGGTTCGCCAGACATCCCCATAAAAAGCCACGGAAATTCCCTTACTTTCTTGAAGAATGAGTTTCAGAAGAATGCGGAATCCTCCATTAATATATCCTTAGAGAAAGGCATCAATGGGTTAGAAATTCAAGGTGCCCATGAGACCCCACCTGGAAAGACTTCAACATTGTGGCAAACCCCGAATGAAGATGTGTTTCTTGAAGCTTCATTTGAGCTTCCTCCACCACCAATGACCCAAGAAAATTTGCTCAAAGATCTTCCGTCTGCTATAAGCATCAATGACGATTGCATGGACAGCCCTGAGGTTCCGAGTGGAGAAACCTTTGATGTCATAAAAAATGATTCTCCCCCAAGCTTAGGAGAAGATGACTCTCTTAAACTTATGGAGTTGCCTCAAAAGACTGAATTTGGATCACTGAAAGGTAGTGATGAGTGTGAGGTGGAAGGAGAATTTCAGAAGTTGCAAAAAGAATATGAGTTCCAAAAGAAGGAACTGACAGAAACAAGGAGAGCTTTAGAGGAGCTTAAGAGGGAGAACAAACTCAAGACTAGAGAATGTCAAGAAGCTTGGAAGTCTTTGCAGGAGCTCCAGAATGAGCTCATGCGAAAATCAATGCACGTTGGGTCTTTGGCTTTTGCCATTGAGGGACAAGTGAAAGAGAAGAGCAAATGGTTCTCGTCCTTGAGGGGCTTGAAAAGAAAGTTGAAGGTTTTGAAATTAGAACACATTAATCTGTCCCAAGAGGTTTCATCATATAAGAAGTGCCTTGCAGATATGAATGAAATGAGCTCTACCATTCAGTCTACAATGAAACAGCAAACAGATTCCTATGAACATCTTAAGGTCAAATTTATTGAAGGGGTTAAGGAACAGAAGGAACTTTACAATAAGGTTTTAGAGTTGAAAGGAAACATAAGGGTGTTTTGCCGATGTAGGCCACTAAACGGTGAAGAAATTGCAGCTGGAGCTTCAATGGCAATTGACTTTGAATCTGCTAAGGACGGCGAGCTTACAGTAAAATCAAATGGGGCACCCAAGAAAACCTTCAAGTTTGATGCTGTTTTTGGTCCCCTGGCAAACCAAGCTGATGTTTTTGAAGACACTGCACCATTTGCAGCCTCAGTTCTAGATGGGTACAATGTCTGTATATTTGCTTATGGGCAGACTGGAACAGGGAAGACTTTCACAATGGAGGGCACTGATGAAGCTCGTGGAGTTAACTTTAGGACTCTTGAAGAGCTGTTTCACATTATCAAGGAGCGGCAGCAGCAATTCCGATATGATATATCTGTTAGTGTCCTAGAAGTTTATAATGAGCAAATACGAGATTTGCTAGTTACAGGAACTCAGCCTGGAGTTGTCACAAGGAGGCTTGAAATAAGGCAAGTGGGTGAAGGAATACATCATGTGCCTGGACTGGTTGAAGCACATGTGAACAACACGAGCGAGGTCTGGGAAGTTCTACAAACTGGCAGTAATGCAAGGGCTGTCAGTTCAACTAATGCTAATGAGCACAGTAGCCGATCCCACTGCATACACTGTGTGATGGTGAAAGGAGAGAATTTGCTGAATGGAGAATGCACAAGAAGCAAGCTATGGCTTGTTGACCTAGCAGGAAGTGAGAGAGTAGCCAAGACTGAAGTACAAGGAGAAAGGCTCAAGGAAACCCAAAACATTAACCGTTCTCTTTCAGCTCTTGGAGATGTCATTTCTTCACTTGCAACTAAAAGTCCACACATCCCCTTCAGGAACTCCAAGCTGACCCACTTACTTCAAGACTCTCTAGGAGGAGACTCCAAGACGCTCATGTTTGTACAGATCAGTCCTAATGAGAATGACTTGAGTGAGACTCTTTGCTCCCTCAATTTTGCAAGTAGAGTGAAAGGAATAGAGTTAGGTCCTGCAAAGAAGCAATTGGACAGTTCTGAACTCATAAGATACAAACAACTGGTTGATAAAACAAAGCTAGATGTAAAGAGCAAAGATGTGCAAATTAAGAAGATGGAGGAAACAATCCATGGTTTAGACCTAAAAGTGAAAGAAAGAGACCTTAAAAACAAAAACCTACAAGACAAGGTAAAAGAATTGGAATCGCAGCTTCTAGTAGAGAGAAAACTGGCACGACAGCATGTGGACACCAAAATAGCTGAGCAGCTGTTACTGCAGCAACAACTGAAACAACAGCAGCAGCAGCAGGAGGAGCAAACTGCTGCACCCATGAGGCCACCACTTGCAAGCCGGCCTTTGGGAAGTTACAAGAATGTGGAAGAAACAAATAACTCAATGTGCAAAGATCCAGTAAATCTCACTACTAAACCTCTTAGTGAGAACTGCAACAGCCACAAACCTCCCATGCCCCTTCCACCTACAGATGGCTTTGTCAAGTACATTGATCCCATGGAAAAAGAAAACAATCCTGAGGTGGCTGAACAACTACCAATCCCAAAGAGGACAGGAAGAGCCTCTATCTGCACAACAGCAAGGAGGATTCCAGTAGCTCCTGCTCCACGACGCAACTCTCTAATCCCACTCCCCAGTGCACCAAGCTCCGCACGGTCTCCACCATCATTTTTACCACTGCCACCTATTGAATCCGATAATAAAGAAGATACAGATGGTCAAGAAGCTAACTGCCTGCCTGAACAAACTGCTTGGAGTAGTCCCAAAGGACTCAAGGCTAGTGAGGGTAAGAAGCTAGGCAGCATACTGAGACGAAGCCTTCAAAGAAAGATTCACATGAAGTCCCCAATGCAGCAAATGAGAAAAGGTGGTATAAATGTAGGGATGGAGAAGGTTAGAGTCTCCATTGGAAGCCGAGGAAGAATGACATATAGAGGGATGCTCAGCAATGCTAGAAGAGGGGGAACAATGCAGCAAAAGCAGAGCCAGAAGGACAAGGAAAGGGGGTGGAATATAGGAACAGCAGGGAGAACTGGCATATAA 3225 0.4372 MVGDCDDDQWIDPLLITDASLQQQVSQYPLSFTASAMADPLDVNSNIKEDVSCEDQSLETISSQNFNDPLADGVFDGRSILGFSLTSPDLVICTGSPDIPIKSHGNSLTFLKNEFQKNAESSINISLEKGINGLEIQGAHETPPGKTSTLWQTPNEDVFLEASFELPPPPMTQENLLKDLPSAISINDDCMDSPEVPSGETFDVIKNDSPPSLGEDDSLKLMELPQKTEFGSLKGSDECEVEGEFQKLQKEYEFQKKELTETRRALEELKRENKLKTRECQEAWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSKWFSSLRGLKRKLKVLKLEHINLSQEVSSYKKCLADMNEMSSTIQSTMKQQTDSYEHLKVKFIEGVKEQKELYNKVLELKGNIRVFCRCRPLNGEEIAAGASMAIDFESAKDGELTVKSNGAPKKTFKFDAVFGPLANQADVFEDTAPFAASVLDGYNVCIFAYGQTGTGKTFTMEGTDEARGVNFRTLEELFHIIKERQQQFRYDISVSVLEVYNEQIRDLLVTGTQPGVVTRRLEIRQVGEGIHHVPGLVEAHVNNTSEVWEVLQTGSNARAVSSTNANEHSSRSHCIHCVMVKGENLLNGECTRSKLWLVDLAGSERVAKTEVQGERLKETQNINRSLSALGDVISSLATKSPHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVKGIELGPAKKQLDSSELIRYKQLVDKTKLDVKSKDVQIKKMEETIHGLDLKVKERDLKNKNLQDKVKELESQLLVERKLARQHVDTKIAEQLLLQQQLKQQQQQQEEQTAAPMRPPLASRPLGSYKNVEETNNSMCKDPVNLTTKPLSENCNSHKPPMPLPPTDGFVKYIDPMEKENNPEVAEQLPIPKRTGRASICTTARRIPVAPAPRRNSLIPLPSAPSSARSPPSFLPLPPIESDNKEDTDGQEANCLPEQTAWSSPKGLKASEGKKLGSILRRSLQRKIHMKSPMQQMRKGGINVGMEKVRVSIGSRGRMTYRGMLSNARRGGTMQQKQSQKDKERGWNIGTAGRTGI* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1141 1074 Coils Coil 809 829 - -
Vvi19g1141 1074 SMART kinesin_4 396 732 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g1141 1074 Coils Coil 322 342 - -
Vvi19g1141 1074 Gene3D Kinesin motor domain 341 726 IPR036961 -
Vvi19g1141 1074 Coils Coil 245 279 - -
Vvi19g1141 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 761 IPR027417 -
Vvi19g1141 1074 ProSitePatterns Kinesin motor domain signature. 624 635 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi19g1141 1074 Pfam Kinesin motor domain 404 724 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g1141 1074 ProSiteProfiles Kinesin motor domain profile. 398 724 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g1141 1074 FunFam kinesin-like protein KIN-14R 343 726 - -
Vvi19g1141 1074 PANTHER KINESIN-LIKE PROTEIN KLP-3 226 959 IPR027640 GO:0003777|GO:0007018
Vvi19g1141 1074 CDD KISc_C_terminal 396 726 - -
Vvi19g1141 1074 MobiDBLite consensus disorder prediction 824 845 - -
Vvi19g1141 1074 MobiDBLite consensus disorder prediction 1044 1074 - -
Vvi19g1141 1074 Coils Coil 773 800 - -
Vvi19g1141 1074 PRINTS Kinesin heavy chain signature 625 643 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g1141 1074 PRINTS Kinesin heavy chain signature 674 695 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g1141 1074 PRINTS Kinesin heavy chain signature 594 611 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g1141 1074 PRINTS Kinesin heavy chain signature 472 493 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g1141 1074 MobiDBLite consensus disorder prediction 926 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1141 Vvi-Chr19 18293840 18299172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1141 341 745 Calmodulin-binding Proteins AT5G65930 40.686 3.30e-82 290