LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g1132	ATGGATGAAGAAACCTTTTTTCCATCTGATACTGATATTGATTTCAGCTTCACCTCCACCACCTCCTCCGTCACCACAGCCACCGACCGCACCTTTGCATCCTCCAGCGCTCGCACCAGCCTCGCCCGCTCCAGTCTCACTCTCAGCTTCAACGAGTCACGCCTCTCCACCTCAACTGCCGGAGCCACCGCTGCGGCCAACCTCCACCATCGTCCTCACCGCAAATCTGACCCGCATTGGTCGGCAATCAACGCCGCCACTACGTTGTCGTCAGATGGAGCACTTCACCTTCGCCACCTCAAGCTCCTCCGCCACCTAGGCACCGGCAACCTCGGCCGTGTCTTCCTCTGTCGCCTCCGAGACTGCGACGCTGCCAACTTCGCCCTCAAGGTAGTGGATAGAGATGCTCTAACGAACAAGAAGCTCTCTCACGTGCAAATGGAGGCCGACATCCTCTCAGCGCTCGACCACCCTTTTCTGCCTACGCTCTATGCCCACCTCGAAGTCTCCCACTACACTTGCCTCCTCATCGATTACTGCCCCGGTGGCGACCTCCACTCCCTCCTTCGCAAGCAGCCCGGAAACCGGCTACCGGTCGACGCGGTCAGGTTCTACGCGGCCGAGGTGCTGGTAGCCCTTGAGTACCTTCACGCCACTGGCGTCGTTTACCGGGATCTGAAGCCGGAAAACGTTTTACTCCGTGAGGATGGCCACATCATGTTGTCAGACTTCGACTTGTGCTTCAAGGCCGATGTGGTGCCTATACTGGAGAGCCGAGCTCGGACGAGACCGGTTCATGGATGTTTCGGATCGCGGGAGGCGGCAGAAGAGGTGGTGGCGGAGTTCGTGGCCGAGCCGACGGACGCGTTTTCCAGGTCCTGCGTCGGAACCCACGAATACCTGGCGCCGGAGTTGGTCGCTGGCACCGGCCATGGCAACGGCGTTGACTGGTGGGCGTTTGGGGTGTTTATATTTGAGATGTTGCATGGAACGACTCCTTTTAAAGGAGGGAGCAAAGAAGCCACCTTGCGCAATATAGCATCGACCCGGCAAGTTAAGTTCCAAGCCAGAGATGAAGAAGAAAAGGGGGTCGGAATTACAGAAGCAAGAGACTTGATTGAAAGACTATTAGTCAAGGACCCAAGGAAGCGTCTAGGGTTCTCCAGGGGTGCGACGGATATTAAACGGCACCCTTTCTTTAACGGGATAAAATGGCCTCTGATTCGGACGTACACCCCGCCGGAGGTACGAGGAGTTGCGAGGAAGACCAAGGCACACGTGAGTCACGTGACGGGGGTTCCCAGTGAAAGAGGGCATTGGTGGTGGAATTCTAAGAAAAATAAGGGGTCAAAGCACAATTTCACTTTTAATAATAACAACTATTACTCTTATATTAATTATAAAAAGGTTAAGAAATGTGCTTAG	1425	0.5502	MDEETFFPSDTDIDFSFTSTTSSVTTATDRTFASSSARTSLARSSLTLSFNESRLSTSTAGATAAANLHHRPHRKSDPHWSAINAATTLSSDGALHLRHLKLLRHLGTGNLGRVFLCRLRDCDAANFALKVVDRDALTNKKLSHVQMEADILSALDHPFLPTLYAHLEVSHYTCLLIDYCPGGDLHSLLRKQPGNRLPVDAVRFYAAEVLVALEYLHATGVVYRDLKPENVLLREDGHIMLSDFDLCFKADVVPILESRARTRPVHGCFGSREAAEEVVAEFVAEPTDAFSRSCVGTHEYLAPELVAGTGHGNGVDWWAFGVFIFEMLHGTTPFKGGSKEATLRNIASTRQVKFQARDEEEKGVGITEARDLIERLLVKDPRKRLGFSRGATDIKRHPFFNGIKWPLIRTYTPPEVRGVARKTKAHVSHVTGVPSERGHWWWNSKKNKGSKHNFTFNNNNYYSYINYKKVKKCA*	475

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g1132	474	FunFam	Serine/threonine-protein kinase OXI1	289	418	-	-
	Vvi19g1132	474	PANTHER	FLIPPASE KINASE 1-RELATED	27	419	-	-
	Vvi19g1132	474	SUPERFAMILY	Protein kinase-like (PK-like)	78	427	IPR011009	-
	Vvi19g1132	474	FunFam	Serine/Threonine Kinase	98	184	-	-
	Vvi19g1132	474	FunFam	Serine/threonine-protein kinase OXI1	184	252	-	-
	Vvi19g1132	474	ProSiteProfiles	Protein kinase domain profile.	100	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi19g1132	474	CDD	STKc_phototropin_like	107	416	-	-
	Vvi19g1132	474	Gene3D	Phosphorylase Kinase; domain 1	99	422	-	-
	Vvi19g1132	474	Pfam	Protein kinase domain	102	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi19g1132	474	Gene3D	Transferase(Phosphotransferase) domain 1	184	418	-	-
	Vvi19g1132	474	SMART	serkin_6	100	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi19g1132	474	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	221	233	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g1132	Vvi-Chr19	18129430	18130854	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g1132	1	468	AGC Kinase Gene Family	AT1G53700	64.066	0.0	579

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vvi19g1132		Pkinase	2.2e-54	CL0016